Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0993 ATGAGGCCTATTTTTGCTGGGAACGTGGGGTATGATACTCGTCAATCGGAGCTTGAACGCTTGTTCTCCAAGTATGGCAGGATTGATCGCGTGGACATGAAATCTGGTTTTGCTTTTGTCTACTATGAGGATGAGCGTGATGCTGAAGATGCAATTCGTGCACTTGACAATGTTCCCTTTGGTTTTGACAAACGAAGGCTGTCCGTAGAATGGGCAAGGGGCGAACGTGGCCGCCATCGTGATAGCTCAAAGCCAAACCAGAGGCCCACAAAAACCCTTTTTGTGATTAACTTCGACCCAATCCGTACTAGAGTTCGTGATATAGAAAATCACTTTGAACCTTATGGGAAGATTGTTCATGTCCGAATTCGTCGGAACTTTGCATTTGTGCAGTTTGAAGAACAAGAAGATGCTACTAAAGCTCTGGAGTGTACAAATATGAGCAAGATACTTGACAGGGTGGTGTCTGTGGAGTATGCTCTGAGAGATGATTGTGAGAGGGCTGACAATTATGACAGCCCTAGAAGAGGTGGTTATGAGAGATCTCCAAGTCCAGCTTATCGTAGGCGACCAGGTCCTGATTATGGTCGTCCGCGTAGTCCTGTATATGATAGATATAATGCAGCAGACAGGCGTAGGAGCCCTGATTATGATAGGCCAAGGAGTCCTGCGTATGATAGGCCAAGGAGTCCTGGATATGGCAGGCACAGGAGTCCTGAATATGGTAGATATCGCAGCCCTTCACCAATACGAAGGCCATGA 762 0.4685 MRPIFAGNVGYDTRQSELERLFSKYGRIDRVDMKSGFAFVYYEDERDAEDAIRALDNVPFGFDKRRLSVEWARGERGRHRDSSKPNQRPTKTLFVINFDPIRTRVRDIENHFEPYGKIVHVRIRRNFAFVQFEEQEDATKALECTNMSKILDRVVSVEYALRDDCERADNYDSPRRGGYERSPSPAYRRRPGPDYGRPRSPVYDRYNAADRRRSPDYDRPRSPAYDRPRSPGYGRHRSPEYGRYRSPSPIRRP* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0993 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 58 IPR000504 GO:0003723
Lan9g0993 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Lan9g0993 253 MobiDBLite consensus disorder prediction 168 253 - -
Lan9g0993 253 SUPERFAMILY RNA-binding domain, RBD 3 163 IPR035979 GO:0003676
Lan9g0993 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lan9g0993 253 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS31-RELATED 5 204 IPR029537 GO:0000398|GO:0005681
Lan9g0993 253 SMART rrm1_1 92 158 IPR000504 GO:0003723
Lan9g0993 253 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lan9g0993 253 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 5 204 - -
Lan9g0993 253 Gene3D - 1 82 IPR012677 -
Lan9g0993 253 Gene3D - 83 173 IPR012677 -
Lan9g0993 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Lan9g0993 253 MobiDBLite consensus disorder prediction 204 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0993 Lan-Chr9 16793971 16796904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0993 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 23.563 3.97e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0993 K12893 - gmx:100797709 434.106