Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0988 ATGGGAAGAGCTCCATGTTGTTCTAAAGTTGGGTTACATAAAGGTCCATGGACTCCTAGAGAAGATGCATTACTCACCAAGTATATTCAAGCTCATGGTGAAGGCCAATGGAAATCATTACCAAAAAAAGCTGGGCTTCTTAGATGTGGAAAAAGTTGTAGACTAAGATGGATGAACTATCTGAGACCGGATATAAAGAGAGGAAACATAACTCCCGAAGAAGATGATCTTATTATCAGAATGCATTCACTTCTTGGAAATCGGTGGTCTCTTATAGCAGGTAGATTACCTGGACGAACAGATAATGAAATAAAGAATTATTGGAACACCCATCTTTGTAAAAAGATGAGAAATCAAGGAGCAGATATAGAAGAAGAAGCTCCCAGTGTCAACAAAAAGAGGAAGAGGAACAGCAGTAGCAAAAAGAAGAACAAGCAAAGGAAGGACAAGAAGAACAAAGACACAAATGAAGAGACACAAAAGACAAAAGTTTATTTACCAAAACCTATTAGGGTCAAACCTTTAACTTTGCCAAGAACAGATAGTACCTTCACCCTTGATTCTAATTCAGGTAGTGGTGCATCATCAAGCCAAGATAATAATAATAACAAGGTGGAAAGCCCAGAAGGTACAAAAGATTTGATGAACATAGTTTGTGAAGTTGGTGAAGAAAATGATGGGTTTGATTTTCTTGGTGAAGAAAATGACATAGTCAATGAATCAGATGTGGTGGAATGCCAACCTTATTTTCCTAAGGATCATGGTAATGGCACGTTAGAGAAACTCTATGATGAGTACTTTCAGCTCTTGAACATGGAAGATTATTGCCAATATGAATTGGATTTGGATTATTTTGCTGAATCTTTGTTGGTCTAA 876 0.371 MGRAPCCSKVGLHKGPWTPREDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKMRNQGADIEEEAPSVNKKRKRNSSSKKKNKQRKDKKNKDTNEETQKTKVYLPKPIRVKPLTLPRTDSTFTLDSNSGSGASSSQDNNNNKVESPEGTKDLMNIVCEVGEENDGFDFLGEENDIVNESDVVECQPYFPKDHGNGTLEKLYDEYFQLLNMEDYCQYELDLDYFAESLLV* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0988 291 Gene3D - 71 116 - -
Lan9g0988 291 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Lan9g0988 291 MobiDBLite consensus disorder prediction 134 149 - -
Lan9g0988 291 CDD SANT 16 61 IPR001005 -
Lan9g0988 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Lan9g0988 291 SMART sant 13 63 IPR001005 -
Lan9g0988 291 SMART sant 66 114 IPR001005 -
Lan9g0988 291 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Lan9g0988 291 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 1 274 - -
Lan9g0988 291 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Lan9g0988 291 CDD SANT 71 112 IPR001005 -
Lan9g0988 291 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Lan9g0988 291 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Lan9g0988 291 MobiDBLite consensus disorder prediction 123 211 - -
Lan9g0988 291 Gene3D - 14 66 - -
Lan9g0988 291 MobiDBLite consensus disorder prediction 178 209 - -
Lan9g0988 291 PANTHER MYB TRANSCRIPTION FACTOR 1 274 - -
Lan9g0988 291 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0988 Lan-Chr9 16725153 16727498 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0988 1 128 MYB Transcription Factor Family AT4G38620 71.094 7.33e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan9g0988 Myb_DNA-binding 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0988 K09422 - gmx:100101857 364.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0635 11 5268955 5270441 Lan9g0988 9 16725153 16727498 LSH
Lan2g0376 2 3717603 3720314 Lan9g0988 9 16725153 16727498 PCT
Lan9g0988 9 16725153 16727498 Lan2g0376 2 3717603 3720314 PCT