Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0985 ATGGAGCAACAACAACAACCACTCTGCGCCGCCACTGAAGATGACGTAACAATTACCACCACAAGACCAGACAACTCCTCAACCGGCGGTGGCATGCGCCACCCAGTCTACCGTGGCGTCCGGAAGCGGCGGTGGGGCAAATGGGTATCGGAAATTCGGGAACCACGCAAGAAGTCACGCATATGGCTCGGCTCATTCCCGGCGCCGGAGATGGCTGCAAAGGCCTATGACGTCGCCGCCTACTGCCTCAAAGGCCGGAAGGCGCAGCTCAACTTCCCTGATGAAGTGCACCACCTGCCGCCTTTGCCGCCGGCGTCTGCATGCACCGCGAGGGACATCCAGGCGGCGGCGGCCAAGGCGGCTCACATGATGATGAAGGCTGCCGGTTCTCCAGATAAACGTGACATTAGTTCTTCTTCCGATTGCGGCGATGACTTTTGGGGTGAGATAGAGCTGCCGGAGCTGATGAATAGTAAGTGGTGGACATTTTCCGGCGACATCACGGCGTGCCTATAG 516 0.5872 MEQQQQPLCAATEDDVTITTTRPDNSSTGGGMRHPVYRGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHHLPPLPPASACTARDIQAAAAKAAHMMMKAAGSPDKRDISSSSDCGDDFWGEIELPELMNSKWWTFSGDITACL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0985 171 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Lan9g0985 171 MobiDBLite consensus disorder prediction 1 35 - -
Lan9g0985 171 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 168 - -
Lan9g0985 171 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 168 - -
Lan9g0985 171 SUPERFAMILY DNA-binding domain 36 95 IPR016177 GO:0003677
Lan9g0985 171 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Lan9g0985 171 CDD AP2 37 94 IPR001471 GO:0003700|GO:0006355
Lan9g0985 171 MobiDBLite consensus disorder prediction 1 28 - -
Lan9g0985 171 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Lan9g0985 171 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Lan9g0985 171 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Lan9g0985 171 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0985 Lan-Chr9 16690506 16691211 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0985 1 158 AP2-EREBP Transcription Factor Family AT1G01250 59.639 3.05e-51 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan9g0985 AP2 1.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0985 K09286 - gmx:100806544 233.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0643 11 5354903 5355606 Lan9g0985 9 16690506 16691211 LSH
Lan9g0985 9 16690506 16691211 Lan2g0737 2 15545684 15546411 LSH
Lan4g0798 4 10029644 10031103 Lan9g0985 9 16690506 16691211 PCT
Lan9g0985 9 16690506 16691211 Lan4g0798 4 10029644 10031103 PCT