Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0958 ATGGCATTTATCAAGGCTCAGAAGTCAAGGGCTTACTTCAAGAGGTATCAAGTTAAGTTCAAGAGAAGAAGAGATGGGAAGACTGATTACCGAGCTAGGATTCGGTTGATTAACCAGGATAAGAACAAGTATAACACCCCCAAATATCGCTTCGTTGTTCGATTTACCAACAAGGACATCATCGCACAAATAACATCTGCTAGCATTGCTGGTGATCACGTCCTTGCTGCAGCTTATGCACATGAACTGCCACACTTCGGTCTTGAAGTGGGCCTTACAAACTATGCTGCAGCTTACTGCACTGGGCTTCTTCTTGCCCGTAGAGTCCTTAAGACACTTGAATTGGATGAGGAGTACGAGGGGAATGTAGAGGCTACTGGAGAGGATTTTTCAGTTGAACCTGCTGAAACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACCACTACTGGCAATCGTGTTTTTGGTGCCCTTAAGGGAGCTTTGGATGGGGGTTTGGATATTCCTCACAGTGACAAAAGGTTTGCTGGTTTTGATAAGGAGAAGAAGGAGCTGGACCCTGAGGTTCACCGCAAATATATTTTTGGTGGACATGTTGCCAACTACATTAAGACCTTGATTGAAGATGAACCTGAGAAATATCAGTCACATTTTAGTGAATATATCAAGCGAGGAATTGAGGCCGATGGACTTGAGGCACTGTACAAAAAGGTTCATGCAGCCATTCGTGCAGATCCTACTGCAAAGAAGTCAGGGAAGCAGCCACCAAAGGAGCACAAGAGATACAACCTGAAGAAGCTTACCTATGAGGAGAGGAAGAATAAGTTGATTGCACGCTTGCAAGCTCTGAACTCTGCTGCTGGAGCTGATGATGATGAGGATGAGGATGATGACTGA 909 0.4521 MAFIKAQKSRAYFKRYQVKFKRRRDGKTDYRARIRLINQDKNKYNTPKYRFVVRFTNKDIIAQITSASIAGDHVLAAAYAHELPHFGLEVGLTNYAAAYCTGLLLARRVLKTLELDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDPEVHRKYIFGGHVANYIKTLIEDEPEKYQSHFSEYIKRGIEADGLEALYKKVHAAIRADPTAKKSGKQPPKEHKRYNLKKLTYEERKNKLIARLQALNSAAGADDDEDEDDD* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0958 302 Coils Coil 270 290 - -
Lan9g0958 302 SUPERFAMILY Translational machinery components 11 251 - -
Lan9g0958 302 Hamap 50S ribosomal protein L18 [rplR]. 14 246 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 14 175 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 PRINTS Ribosomal protein L5 signature 20 39 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 PRINTS Ribosomal protein L5 signature 43 62 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 PRINTS Ribosomal protein L5 signature 84 104 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 PRINTS Ribosomal protein L5 signature 144 163 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 PRINTS Ribosomal protein L5 signature 164 183 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 PRINTS Ribosomal protein L5 signature 206 226 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 Gene3D - 1 291 - -
Lan9g0958 302 Pfam Ribosomal L18 C-terminal region 235 288 IPR025607 -
Lan9g0958 302 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 297 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Lan9g0958 302 CDD Ribosomal_L18_L5e 41 170 - -
Lan9g0958 302 MobiDBLite consensus disorder prediction 249 269 - -
Lan9g0958 302 PANTHER PROTEIN L5, PUTATIVE-RELATED 1 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0958 Lan-Chr9 16101383 16104437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0958 1 292 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 81.849 0.0 503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0676 11 5692114 5694554 Lan9g0958 9 16101383 16104437 LSH
Lan9g0958 9 16101383 16104437 Lan2g0757 2 15978541 15981207 LSH