Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0956 ATGGGAAACAGTGAGGAAGGGAAGTGCATTAAGACCGAAAAGCCTTCTTCACCGGATCAGGCTAACCGGGCGAACCAGGCCAATGTTCATGTCTATCCTGATTGGGCTGCCATGCAGGCATATTATGGACCAGGATTCAGCATTCCACCATACTATAACCCAGCTATGGCGGCTGGTCACGCTCCTCATCCATATATGTGGGGTCCACCACAGCCTATGATGCCACCATATGGGCCACCTTATGCAGCAATTTATCCACACGGAGGGGTTTATACTCATCCTGCAGTTGCTATTGGGCCACATTCACATGGGCAAGGAGTTCCATCTTCACCTGCTGCTGGAACTCCTTCAAGCGTGGAGACACCAACCAAAATTTCTGGAAATACTGATCAGGGTTTAATGAAGAAACTGAAAGGGTTTGATGGGCTTGCAATGTCAATAGGAAATGACAATGCTGGAAGTGCAGGGCGTGGAGCTGAAAACGTGCTGTCACAGAGTGTGGATACCGAGGGTTCAAGTGATGGAAGCGATGGCAACACTTCAGGGGCCAATCAATCAAGGAAAAGAAGCTGCGAGGGAACACCAACCACTGATCGAGAAGGGAAAACTGAGGTAGAAGATAATCCAGTTTCCAAAGAAACTGCTGCTTCTAATAAGATGGTGTCAGCTACGCCAATCAGTGCTGTAGGAAAATTTGTTGGACCTACAGTTTCTTCAGGTATGACCACAACACTGGAGCTGAGGAACCCTTCGGCTGTTAATGCTAAGGCAAAATCCACAAGTGTCCCACAACCTTGTGGAGTTTTGCCTCCTGAAGCTTGGTTACAGGATGAGCGAGACCTGAAACGTGAGAGGAGGAAACAATCAAATCGTGAATCTGCTAGAAGGTCCAGGCTTAGGAAGCAGGCTGAGGCTGAAGAATTGGCACGAAAAGTTGATAACTTGACTGCCGAGAATGTGTCACTGAAATCAGAAATAAACCAGTTGGATGAAAGTTCTGAGAAACTGAGGGTGGAAAATGCTACATTGAAGGAAAAGCTGAAAAATGCTCAACTGGGACAAACAGAAGAGGTCATTTTGAACAGCATTGACATCCAAAGGGCTATACCTAGAAGTACAGAAAACTTACTATCAAGAGTTAATAATTCCAGTTCCAACGATATAACTGCAGAGGATGAGAATGATTATGGTGAGAACAAACCAACATCTGGGGCAAAGCTGCATCAACTACTGGATAATCATAGAGCTAATGCTGTTGCAGCTAGTTGA 1269 0.4594 MGNSEEGKCIKTEKPSSPDQANRANQANVHVYPDWAAMQAYYGPGFSIPPYYNPAMAAGHAPHPYMWGPPQPMMPPYGPPYAAIYPHGGVYTHPAVAIGPHSHGQGVPSSPAAGTPSSVETPTKISGNTDQGLMKKLKGFDGLAMSIGNDNAGSAGRGAENVLSQSVDTEGSSDGSDGNTSGANQSRKRSCEGTPTTDREGKTEVEDNPVSKETAASNKMVSATPISAVGKFVGPTVSSGMTTTLELRNPSAVNAKAKSTSVPQPCGVLPPEAWLQDERDLKRERRKQSNRESARRSRLRKQAEAEELARKVDNLTAENVSLKSEINQLDESSEKLRVENATLKEKLKNAQLGQTEEVILNSIDIQRAIPRSTENLLSRVNNSSSNDITAEDENDYGENKPTSGAKLHQLLDNHRANAVAAS* 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0956 422 MobiDBLite consensus disorder prediction 100 133 - -
Lan9g0956 422 MobiDBLite consensus disorder prediction 1 25 - -
Lan9g0956 422 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Lan9g0956 422 Coils Coil 291 353 - -
Lan9g0956 422 MobiDBLite consensus disorder prediction 236 261 - -
Lan9g0956 422 MobiDBLite consensus disorder prediction 210 224 - -
Lan9g0956 422 Pfam bZIP transcription factor 278 340 IPR004827 GO:0003700|GO:0006355
Lan9g0956 422 SUPERFAMILY Leucine zipper domain 281 337 IPR046347 GO:0003700|GO:0006355
Lan9g0956 422 SMART brlzneu 278 342 IPR004827 GO:0003700|GO:0006355
Lan9g0956 422 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 285 300 IPR004827 GO:0003700|GO:0006355
Lan9g0956 422 MobiDBLite consensus disorder prediction 165 303 - -
Lan9g0956 422 MobiDBLite consensus disorder prediction 192 209 - -
Lan9g0956 422 MobiDBLite consensus disorder prediction 108 130 - -
Lan9g0956 422 MobiDBLite consensus disorder prediction 275 303 - -
Lan9g0956 422 PANTHER G-BOX-BINDING FACTOR 3 1 422 - -
Lan9g0956 422 CDD bZIP_plant_GBF1 283 331 IPR045314 GO:0003700|GO:0006355
Lan9g0956 422 Gene3D - 281 335 - -
Lan9g0956 422 Pfam Disordered region downstream of MFMR 130 257 - -
Lan9g0956 422 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 422 IPR044827 GO:0003700|GO:0006355|GO:0043565
Lan9g0956 422 MobiDBLite consensus disorder prediction 376 390 - -
Lan9g0956 422 MobiDBLite consensus disorder prediction 376 422 - -
Lan9g0956 422 MobiDBLite consensus disorder prediction 165 191 - -
Lan9g0956 422 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 280 343 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0956 Lan-Chr9 16083257 16089298 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0956 1 421 bZIP Transcription Factor Family AT2G46270 49.415 9.60e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lan9g0956 MFMR_assoc 4.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0956 K09060 - gmx:778133 593.964
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0678 11 5705715 5711464 Lan9g0956 9 16083257 16089298 LSH
Lan16g1255 16 20581524 20587166 Lan9g0956 9 16083257 16089298 PCT
Lan9g0956 9 16083257 16089298 Lan16g1255 16 20581524 20587166 PCT