Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0943 ATGCCCAAAATCCCGAACCACCCACCTAATCAGAAGAAGATGGTGTTTAAGAAACTGAAGCACAAAGCCAACTCATTTGAGGACTCCAAATTGCAGAGAAAATTGCGCATCATTTGGCATGATCCTGATGCTACTGACTCATCTTCAGATGAAGAAGGAGGAGATGAAGAAATGCGTAGAAAGACGAAGAGAACCGTGCTTGAGGTTGCTCTTCCCCCTTTTCCTCCTAACCCAGTCGCTGCTGATACTAGCACTGAGAGCTCTAGCAACATTGAATTGAATAAGAAAAGGGTTTTAGCTAAAACCCCATCAGTGAAGGGGAAAACTGCTGGCAAATGCCGAGGCATTCGGATGAGGAAATGGGGCAAATGGGCTGCTGAAATTCGCGATCCCTTTAAAGGCAGGCGACTCTGGTTGGGGACTTACAACACTGCGGAAGAGGCTTCCCAAGCTTATGAGAGGAAAAGGCTTGAATTTGAAACTATGGCTAAGGCCATGTCTGGTGAAAAGAGCAAGAATAACAATGCTGATGTTGTTGTTGGTTTTTCTGCTCAAGCTATGGTTACTCAAGAGAAGAGTAACTTCAATTATAGTGATTCTTCTGGTGCAGCTTCTGTATCAGAGTCAAAATCAGCTGCTACTTTGGATGACTCAGAGTGTGTGTTGTCTCCTGCATCACCATTGTCCGTGCTCGAATTGGATAACTCAGCTTCCAAACCTTCCAATTTGGTGGAGAACGGAAATGTTTCAAACAATGAAGCTGTTGAGAAAAATGGTTTCGAGGCTGATTTTGCTGAGCTGATCGGTAATATTGATGAATCTGGTGAGATCAATGATCTGGAAGCTGAATTGGCAGACCTGGAAATGCCAGATTTGAGTATTTTTAATGTGCCACCACCAACTAATGATGCTGCTGCTGCCGCCGCTCCATCTGCCTTTGAGTTTGATTGGTTAACGTTCGATTTCAATGATGATTTTGGCAGCCTGGAGGACTTTCACATTGGTGGAATCGATGAAGATGGGCCAAGTGAGCTTCCGGATTTCGATTTCGATGACTTTAGTGCTGATGAGTTTGCTGGTTGGATTGAAGAACCCCTCAATATACCTTGCATATAA 1116 0.4418 MPKIPNHPPNQKKMVFKKLKHKANSFEDSKLQRKLRIIWHDPDATDSSSDEEGGDEEMRRKTKRTVLEVALPPFPPNPVAADTSTESSSNIELNKKRVLAKTPSVKGKTAGKCRGIRMRKWGKWAAEIRDPFKGRRLWLGTYNTAEEASQAYERKRLEFETMAKAMSGEKSKNNNADVVVGFSAQAMVTQEKSNFNYSDSSGAASVSESKSAATLDDSECVLSPASPLSVLELDNSASKPSNLVENGNVSNNEAVEKNGFEADFAELIGNIDESGEINDLEAELADLEMPDLSIFNVPPPTNDAAAAAAPSAFEFDWLTFDFNDDFGSLEDFHIGGIDEDGPSELPDFDFDDFSADEFAGWIEEPLNIPCI* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0943 371 ProSiteProfiles AP2/ERF domain profile. 112 169 IPR001471 GO:0003700|GO:0006355
Lan9g0943 371 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Lan9g0943 371 PRINTS Ethylene responsive element binding protein signature 135 151 IPR001471 GO:0003700|GO:0006355
Lan9g0943 371 MobiDBLite consensus disorder prediction 38 91 - -
Lan9g0943 371 MobiDBLite consensus disorder prediction 38 66 - -
Lan9g0943 371 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Lan9g0943 371 CDD AP2 114 159 IPR001471 GO:0003700|GO:0006355
Lan9g0943 371 Pfam AP2 domain 112 161 IPR001471 GO:0003700|GO:0006355
Lan9g0943 371 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF119 14 370 - -
Lan9g0943 371 SUPERFAMILY DNA-binding domain 112 159 IPR016177 GO:0003677
Lan9g0943 371 Gene3D AP2/ERF domain 112 173 IPR036955 GO:0003700|GO:0006355
Lan9g0943 371 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 14 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0943 Lan-Chr9 15800439 15801797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0943 33 370 AP2-EREBP Transcription Factor Family AT1G68550 32.853 2.00e-32 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan9g0943 AP2 1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0943 - - gmx:102664259 368.622