Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0942 ATGAAGGTTTTTGTGAAGACTCTGAAAGGAACGCACTTCGAAATTGAAGTGAACCCCTCAGACACGGTTTCTGAAGTGAAGAAAAATATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCTGCACAGCAAATGCTTATTCATCAAGGAAAAGTTCTCAAGGATGATACTACCGTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTATTGTAATCATGCTATCAAAGACAAGTGCAGTTCCTACTCCAACCTCAGTGTCAACAGCACCTCAAGCTCATGCTGTGACTGGGGCAACACCTCTAGCTGTTACTGCCCCAACACCTCCTACTTTGGTACCAGCTCCTGCTTCGGCACCAGCTCCTGCACCTACATTGTCCAGCACTGCTGTGCCTGGGTCTGATGTATATGGGCAGGCAGCATCCAATCTCGTTGCTGGAAACAACTTGGAGGAAACAATTCAGCACATTGTTGATATGGGTGGAGGGAGCTGGGATAGGGATACTGTTGTTCGTGCTCTTCGTGCTGCTTACAACAACCCTGAGAGGGCCGTTGAATATTTGTATTCTGGCATACCAGAGCAAGCTGAAGCTCCACCTGTGGCACGAGTGCCTGGAAGTGTACAACCTGGAAACCCTCCAGCTGCTGCTCCACAAGCAGCGCCTGTTACTTCTAGTGGACCTAATGCTAATCCTTTGGACCTCTTTCCCCAGGGCCTTCCTAATGTTGGTGCTGGTGGTGCTGGTGCTGGTGGTGCTGGCTCTTTAGATTTTCTGCGCAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTGCAGGCTAATCCACAAATATTGCAGCCTATGCTACAAGAGCTGGGCAAACAAAACCCTCATCTTATGAGATTGATTCAAGAGCATCAAGCTGACTTCCTTCGCCTGATAAATGAACCTGGGGAAGGTGGCGGTGACGGCGACGGCGGTGAGGGGAATATATTGGGACAGCTGGCAGGTGCCATGCCACAATCAGTGACCGTTACCCCTGAAGAGCGGCAAGCAATTGAACGTCTTGAAGCAATGGGTTTTGACCGTGCAATTGTATTGGAGGTGTTCTTCGCTTGTAACAAAAATGAGGAACTGGCAGCCAACTACCTTTTAGATCACATTCATGAGTTTGATGAATAA 1161 0.4815 MKVFVKTLKGTHFEIEVNPSDTVSEVKKNIETVQGADVYPAAQQMLIHQGKVLKDDTTVEENKVAENSFIVIMLSKTSAVPTPTSVSTAPQAHAVTGATPLAVTAPTPPTLVPAPASAPAPAPTLSSTAVPGSDVYGQAASNLVAGNNLEETIQHIVDMGGGSWDRDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVARVPGSVQPGNPPAAAPQAAPVTSSGPNANPLDLFPQGLPNVGAGGAGAGGAGSLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQADFLRLINEPGEGGGDGDGGEGNILGQLAGAMPQSVTVTPEERQAIERLEAMGFDRAIVLEVFFACNKNEELAANYLLDHIHEFDE* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0942 386 SMART uba_6 149 189 IPR015940 -
Lan9g0942 386 SMART uba_6 342 379 IPR015940 -
Lan9g0942 386 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Lan9g0942 386 SUPERFAMILY UBA-like 146 198 IPR009060 GO:0005515
Lan9g0942 386 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 339 380 IPR015940 -
Lan9g0942 386 Gene3D - 246 311 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan9g0942 386 PRINTS DNA repair protein Rad23 signature 281 303 IPR004806 GO:0006289
Lan9g0942 386 PRINTS DNA repair protein Rad23 signature 336 352 IPR004806 GO:0006289
Lan9g0942 386 PRINTS DNA repair protein Rad23 signature 353 367 IPR004806 GO:0006289
Lan9g0942 386 PRINTS DNA repair protein Rad23 signature 368 383 IPR004806 GO:0006289
Lan9g0942 386 MobiDBLite consensus disorder prediction 200 229 - -
Lan9g0942 386 TIGRFAM rad23: UV excision repair protein Rad23 1 384 IPR004806 GO:0006289
Lan9g0942 386 SUPERFAMILY XPC-binding domain 251 317 IPR036353 GO:0003684|GO:0006289|GO:0043161
Lan9g0942 386 CDD UBA2_RAD23_plant 338 380 - -
Lan9g0942 386 Pfam XPC-binding domain 255 311 IPR015360 GO:0003684|GO:0006289|GO:0043161
Lan9g0942 386 Gene3D - 334 381 - -
Lan9g0942 386 SMART CBM 253 296 IPR006636 -
Lan9g0942 386 Gene3D - 142 192 - -
Lan9g0942 386 SUPERFAMILY UBA-like 323 385 IPR009060 GO:0005515
Lan9g0942 386 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Lan9g0942 386 CDD UBA1_Rad23_plant 143 192 - -
Lan9g0942 386 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 77 - -
Lan9g0942 386 PANTHER UV EXCISION REPAIR PROTEIN RAD23 82 385 - -
Lan9g0942 386 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 82 385 - -
Lan9g0942 386 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 77 - -
Lan9g0942 386 Gene3D - 1 80 - -
Lan9g0942 386 SMART ubq_7 1 75 IPR000626 GO:0005515
Lan9g0942 386 SUPERFAMILY Ubiquitin-like 1 88 IPR029071 -
Lan9g0942 386 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 147 190 IPR015940 -
Lan9g0942 386 Pfam UBA/TS-N domain 342 377 IPR015940 -
Lan9g0942 386 Pfam UBA/TS-N domain 149 187 IPR015940 -
Lan9g0942 386 CDD Ubl_Rad23 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0942 Lan-Chr9 15770221 15778963 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0942 1 91 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.967 1.35e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0942 K10839 - gmx:100809066 565.074