Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0850 ATGACTTTCTTTCTATATTCTACCATTAATTTCTTTGTTTTTCATATTCTTTTTTTTGTTATTGCTAATATTTTTCTCAGTTTGCTCATATCCTCTGTCTATCTCCTTGTCAACACTGAAACGTTGATAAAAGGGATGGGCAGGGTAAAGCTAAAGATAAAGAAATTGGAGAACACCAATGGCCGTCAAGCAACCTATGCTAAAAGAAAGAATGGAATCATTAAGAAAGCTTCTGAGTTATCTATACTATGTGACGTTGATATTATACTTCTCATGTTCTCACCAAGTGGAAAACCTTCATTATGTAGGGGAAGGCGCAGTAACTTTGAAGAGGTTATCACAAAGTTTGCTCAAATGACACCACATGAAAGAGCAAAAAGGAAGTTGGAGAGCCTTGAAGCACTGAAGAAAACATTTAAGAAGTTAGACCATGATGTAAATGTGCAAGAATTTTTGGGTACAAGTAGTCAAACTATTGAGGACCTAAGTAATCAATCCAGGGTATTACAGACTTTGATTTCTGAAAGAAACAAGAGACTAAGCCAGTGGACTGACATTGGTAAAATCAGTAATGTGGAACAATTGGAACAAATGGAAAATTCACTCAAGGAATCACTTAATCAAATTCGAAATCGTAAGGAAAATATGCAAAAGCAACAACTTGTATCACTGCAATGTAATAACCAGTTCAATGAAATGCATAATCCCTTCAGAATGAGTGGTGACCAGCATCTCCAATCTCTATCATGGATTGCTAATGGTGATAGCCAAAATATGGTTTTACCTGAAGATTCAAAATTGTTTCTCCATAGAGATGTGGAGGGCTCTGCAAGCTCCTCTTTTGGAAGTTATGCAAGTTATCTTGGCTCGAGTACCAAAACCGATATTTCGAATTCTGGCCAAGAAAACGGTGTCCTTAGTGACTTGAGCAGCACTGCTCCTGCGAGGCTACAATTAAATGGGAAGTTTCAATACCAACCATATAACTTTAATTTACTAAATGATATGAAGTTACAACCTGCAGCAGAGATGAATCCACATGAAAACAATGTAGATTATCATGTGAATGCAAGTTTCGAACCGCCTCGGCCTAGTTATGATTCTAACCACCATAATTGGAATTCCACCTCAGGTCCTTGTGCTGTTACAATGTTTGAAGAGTATTTGTTTGGCCAGGCCAGTTTTCCTCAGGTGCATTTTGGTTTCACATAG 1212 0.3729 MTFFLYSTINFFVFHILFFVIANIFLSLLISSVYLLVNTETLIKGMGRVKLKIKKLENTNGRQATYAKRKNGIIKKASELSILCDVDIILLMFSPSGKPSLCRGRRSNFEEVITKFAQMTPHERAKRKLESLEALKKTFKKLDHDVNVQEFLGTSSQTIEDLSNQSRVLQTLISERNKRLSQWTDIGKISNVEQLEQMENSLKESLNQIRNRKENMQKQQLVSLQCNNQFNEMHNPFRMSGDQHLQSLSWIANGDSQNMVLPEDSKLFLHRDVEGSASSSFGSYASYLGSSTKTDISNSGQENGVLSDLSSTAPARLQLNGKFQYQPYNFNLLNDMKLQPAAEMNPHENNVDYHVNASFEPPRPSYDSNHHNWNSTSGPCAVTMFEEYLFGQASFPQVHFGFT* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0850 403 SUPERFAMILY SRF-like 47 140 IPR036879 GO:0003677|GO:0046983
Lan9g0850 403 ProSiteProfiles MADS-box domain profile. 46 98 IPR002100 GO:0003677|GO:0046983
Lan9g0850 403 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL65 ISOFORM X1 46 393 - -
Lan9g0850 403 Gene3D - 59 142 IPR036879 GO:0003677|GO:0046983
Lan9g0850 403 Coils Coil 122 142 - -
Lan9g0850 403 PANTHER SERUM RESPONSE FACTOR HOMOLOG 46 393 - -
Lan9g0850 403 SMART madsneu2 46 105 IPR002100 GO:0003677|GO:0046983
Lan9g0850 403 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 56 99 IPR002100 GO:0003677|GO:0046983
Lan9g0850 403 CDD MADS 47 99 - -
Lan9g0850 403 PRINTS MADS domain signature 48 68 IPR002100 GO:0003677|GO:0046983
Lan9g0850 403 PRINTS MADS domain signature 68 83 IPR002100 GO:0003677|GO:0046983
Lan9g0850 403 PRINTS MADS domain signature 83 104 IPR002100 GO:0003677|GO:0046983
Lan9g0850 403 Coils Coil 192 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0850 Lan-Chr9 14291645 14295713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0850 46 396 Type I MADS-box Gene Family AT2G03060 47.507 1.03e-104 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lan9g0850 SRF-TF 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0850 - - lang:109356063 789.645