Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0845 ATGGCTTCTGTGCCAGAAGTTTCTGAAATCTCCTCTCTGTTTGAAAGATTAGTGAGAAACAGAGACATGTCTATGTTCTTGCCTTTCATTCTTGGCTTCTCAGGGAGAAATAACGAAGACCCAGATCATGAAACTGAAGATAATGAACGTTCACAGAGTCAAAGAATCATCTTGGTGAACCCCTTTACACAAGGGATGGTAGTTATTGATGGTGCTTCAAGCCTTGAGAACTTGTTTCATGAACTTGGTAGTAGCAAAATTGGGCACCCACCAGCTTCAAAAGAATCAGTTGAGGCCATGCCAAGTGTGGAAATTGAAGAAAGTGATGATCTTGGAGAATGTGTGGTTTGTTTGGAGGATTTTGAGGTTGGTGGGGTGGCAAAGGTTATGCCTTGTAATCATAAATTTCACTCTAATTGCATTGAGAAGTGGCTTGGGATTCATGGGAATTGCCCTGTTTGTAGGTATGAGATGCCTGTTGAGGAGAAAGATGGTGGAAGGAAAAGTGACGATGAAGGTGGTGAGAGAAGGAGGGTTGGTGGTGGAGAAATTTGGATTAGTTTTTCTATTAATAGAGGTAGTAGGAGAAGCAATGATGCAAATGAAGCTAATTCTGGTGATTCCAGTTATAATTCATCCAGTCCTAGTGATTCTGCTGAAGTAGAGGACCAGTGA 675 0.4163 MASVPEVSEISSLFERLVRNRDMSMFLPFILGFSGRNNEDPDHETEDNERSQSQRIILVNPFTQGMVVIDGASSLENLFHELGSSKIGHPPASKESVEAMPSVEIEESDDLGECVVCLEDFEVGGVAKVMPCNHKFHSNCIEKWLGIHGNCPVCRYEMPVEEKDGGRKSDDEGGERRRVGGGEIWISFSINRGSRRSNDANEANSGDSSYNSSSPSDSAEVEDQ* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0845 224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 161 IPR013083 -
Lan9g0845 224 MobiDBLite consensus disorder prediction 161 180 - -
Lan9g0845 224 MobiDBLite consensus disorder prediction 194 218 - -
Lan9g0845 224 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Lan9g0845 224 SUPERFAMILY RING/U-box 102 160 - -
Lan9g0845 224 MobiDBLite consensus disorder prediction 194 224 - -
Lan9g0845 224 MobiDBLite consensus disorder prediction 161 179 - -
Lan9g0845 224 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 169 - -
Lan9g0845 224 SMART ring_2 114 154 IPR001841 -
Lan9g0845 224 Pfam Ring finger domain 113 155 IPR001841 -
Lan9g0845 224 CDD RING-H2_PA-TM-RING 113 155 - -
Lan9g0845 224 PANTHER - 8 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0845 Lan-Chr9 14250208 14251096 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0845 8 208 C3H Transcription Factor Family AT1G26800 49.010 2.74e-61 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0845 - - lang:109356689 433.721