Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0838 ATGTTGAATGTTGACATAGTGAGTAACAAGAAAAGGAAAAGATGTGGGAGGATTTTCAGGTTCAAGAACTTTGGTGAAGATGGGTACCCAGTTATGTTTACAGGAGCATTTCGTGAGAATGTGAATGCTCTACTTGAATATGCAAATTTGGAGAGTAATGTAGGTATTGGAATGCCAATGTGGTCGTTTCAACTTGAAGTTCATCATCAACCTCCTTTACATATCTTGATGTTTGTGATTGAAGAGCCAATAGAGGCATCACTCAATCGTCATTGCAAGCATTGTCAATACGTTGGGTGGGGCAACAATTTCATTTGCAATAAGAAGTATCACTTTCTGTTACCTTCAAAGGAGGCATTGGCTACATGCACTAGCTGTGAAGGTTGCTGTAATGATTCATTAACTAGAATGAATAATGGTAAGTCCAAATTAATAGAATTTCAGGGTCATATGATGCATGGTGTTTTTCACTCTAATGGGTTCGGCCATTTGCTATGTGTTAATGGATTGGAAATGGGTTCAAATTTGGCTGGGAATCAAATCATGGACTTTTGGAATCGTTTATGCTATGCATTGCAAGCAAGGAAAGTGAGTTTGAATGACATTTCACATAAAAGAGGCATGGAACTAAGACTTATGAATGGAATAGCATATGGTGAGCCATGGTTTGGTCGTTGGGGTTACAAATTTGGTCGAGGATGTTTTGGTGTAACTCAATCTATGTACCAAAAAGCCATAGATGCAATAAGAAGCATGCCACTCTACTTGTTCATCCATCACATTTCTAATAATTCTAACCATGACATTCCACTCATATGCTCAAGGTACCAAACACTTTCTGATCAATCTCTAGTAACCCTTGGTGACCTATTTCGTTACATGTTAGAGCTTAGGTCACGTATTCCTTGTGAAACCAACATTGGTTCTTATAACACCAATGCCTTAGTTGAAACCAATTGTCGTTGGTCACCTAAGAGGATCGAGATGGCAACAAGGGTCATTGTCGAGGCATTGAAAAGAACTGAGTTCCGATGGATTTCTAGGCAAGAAGTTAGAGACGCTGCTCGTGTGTACATTGGTGACACTGGCTTGCTTGATTTCGTGCTTAAGTCACTAGGAAACCACATTGTGGGAAATTACTTGGTTCGCCGAAGCTTGAATCCGGTGACGAAAGTGTTGGAATATTGCTTAGAAGACATTTCAAATGTGTACCCTTGTCATGAAGGTTTGGTTAGTAATAATAAAGTGAAGGACAAGTACAAGGTTACAAGGGCTCAACTCATGAAGGACATGGTTTATTTGTACAAGTACATTATTGATCAAAAACCAATGATAGGATCAGGATTTCTTTCAGCTATATCATTGGCTTCTAGGATAATTCTTGACACTAAGTATCTTATCAAAGATTACATTGGAGAGGTTCCTTTTCAAGTTGAGTTAGCCTCAGATGGGAAATTCAACCTTTATTGTACAATTTTCTTGAGGAACAATGTTGGGTCTAATGAATATTTCAACAATATAATGCCACCCTATGAGTGTGTCACATTGAAAAGTAGTGCTACAATCAATGACTTGAAGCTAGAGGTTGAAAAGAATTTTAAAGAAATCTATTGGGGTTTGAGTAGTTTTGTTGTGGAATCAATTGGAAACTCGAATTATGCTAATGGGTCAGAAATGGTTTTTGGGCTAGTTGAAGTGGGTGCAAAAATTGTACTAGAGTGTAATTGGCATGGTGACATGATTATAAACATGATTGAGAAAATATGTGAAAGTGACCCTAACAATGGCATTGTGGAGTGCACTTGTGGGACTAAAGAAGATGATGGAGAAAGATTGGTTTCTTGTGATATTTGTGAAATTTGGCAACATACTAGGTGTGCTCGCATTCCAAATGATGAAGAAGTTCCTCATATTTTTCTGTGCAAGAGGTGTGAACAAGAAATTGTTCAGTTCCCTTCGTTTCCATAG 1968 0.3811 MLNVDIVSNKKRKRCGRIFRFKNFGEDGYPVMFTGAFRENVNALLEYANLESNVGIGMPMWSFQLEVHHQPPLHILMFVIEEPIEASLNRHCKHCQYVGWGNNFICNKKYHFLLPSKEALATCTSCEGCCNDSLTRMNNGKSKLIEFQGHMMHGVFHSNGFGHLLCVNGLEMGSNLAGNQIMDFWNRLCYALQARKVSLNDISHKRGMELRLMNGIAYGEPWFGRWGYKFGRGCFGVTQSMYQKAIDAIRSMPLYLFIHHISNNSNHDIPLICSRYQTLSDQSLVTLGDLFRYMLELRSRIPCETNIGSYNTNALVETNCRWSPKRIEMATRVIVEALKRTEFRWISRQEVRDAARVYIGDTGLLDFVLKSLGNHIVGNYLVRRSLNPVTKVLEYCLEDISNVYPCHEGLVSNNKVKDKYKVTRAQLMKDMVYLYKYIIDQKPMIGSGFLSAISLASRIILDTKYLIKDYIGEVPFQVELASDGKFNLYCTIFLRNNVGSNEYFNNIMPPYECVTLKSSATINDLKLEVEKNFKEIYWGLSSFVVESIGNSNYANGSEMVFGLVEVGAKIVLECNWHGDMIINMIEKICESDPNNGIVECTCGTKEDDGERLVSCDICEIWQHTRCARIPNDEEVPHIFLCKRCEQEIVQFPSFP* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0838 655 PANTHER PHD FINGER PROTEIN MALE STERILITY 1 8 655 - -
Lan9g0838 655 ProSitePatterns Zinc finger PHD-type signature. 600 644 IPR019786 -
Lan9g0838 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 595 652 IPR013083 -
Lan9g0838 655 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 8 655 - -
Lan9g0838 655 Pfam PHD-finger 600 646 IPR019787 -
Lan9g0838 655 SUPERFAMILY FYVE/PHD zinc finger 586 647 IPR011011 -
Lan9g0838 655 SMART PHD_3 599 645 IPR001965 -
Lan9g0838 655 CDD PHD_MMD1_like 599 644 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0838 Lan-Chr9 14172425 14176068 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0838 10 655 PHD Transcription Factor Family AT5G22260 50.817 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan9g0838 PHD 4.9e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0838 - - gmx:100780210 1130.93