Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan9g0837 | ATGAGCGATCATTTGGTGCTCTTCGTTGACCGTCTCTTGCGCCCTGTCCCCGTTGACCCCGTCGAGCAGCCATCTCAACTCCCTTCCGGTCCGTCGCCGTCGCAAGCCGCGGATATTGTCACTGGACCATCCGGACCAGCTCCGCCGGTTAATCATGCCGACGAAGCTGTGCCGGAGCATGGTGAGGGTGGCGATGAGGAGGAGCCGCTGATACAGATGGTGGAGTGCCGTATTTGTCAGGAAGAGGATGGAGTTTCCAATTTGGAGAGCCCTTGCGCCTGCAGCGGCAGTCTCAAGTATGCTCACCGAAAGTGTGTCCAGCATTGGTGCAATGAGAAAGGAGACATCACTTGTGAGATATGCCATCAGCCTTATCAACCTGGTTATACTGCCCCACCACCTCGTCCTAATCCTGATGAAACTACCATTGATATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCATGATCCTCGACTCTTGGCAATAGCAGAGGCAGAACGTCAATTCTTGGATGCCGAGTATGATGAGTATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCAGCTGCTCTAATTTTAATGGCCCTTCTACTCTTGCGACATGCACTCTCTGTCACAGATGGTGATGCTTCTGATGATGACCCGTCCAATTTTTTATCTCTATTCTTGCTTCGAGCTGCTGGGTTTCTTTTACCTTGCTATATTATGGCTTGGGCAATCAGTATCCTGCAACGTCGGCGTCAAAGACAAGAGGCTGCAGCTCTAGCAGCAACACAAGTTGCCTTTGTACTACAATCCGGGCAGCGTCGGGGTCTTCAATTTGCAATAGCACCAGGACCCACAGTGCACCCGGAACAAGTGTAG | 882 | 0.5204 | MSDHLVLFVDRLLRPVPVDPVEQPSQLPSGPSPSQAADIVTGPSGPAPPVNHADEAVPEHGEGGDEEEPLIQMVECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPNPDETTIDIGGGWTISGTPLDLHDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFLSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQRRGLQFAIAPGPTVHPEQV* | 294 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan9g0837 | 293 | CDD | RING_CH-C4HC3_MARCH | 76 | 122 | - | - | |
| Lan9g0837 | 293 | Pfam | RING-variant domain | 76 | 121 | IPR011016 | GO:0008270 | |
| Lan9g0837 | 293 | MobiDBLite | consensus disorder prediction | 18 | 66 | - | - | |
| Lan9g0837 | 293 | Coils | Coil | 164 | 184 | - | - | |
| Lan9g0837 | 293 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 1 | 284 | IPR033275 | - | |
| Lan9g0837 | 293 | Pfam | Protein of unknown function (DUF3675) | 127 | 246 | IPR022143 | - | |
| Lan9g0837 | 293 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 64 | 131 | IPR013083 | - | |
| Lan9g0837 | 293 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 68 | 128 | IPR011016 | GO:0008270 | |
| Lan9g0837 | 293 | SUPERFAMILY | RING/U-box | 74 | 126 | - | - | |
| Lan9g0837 | 293 | SMART | ringv_2 | 75 | 122 | IPR011016 | GO:0008270 | |
| Lan9g0837 | 293 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 1 | 284 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan9g0837 | Lan-Chr9 | 14167559 | 14170768 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan9g0837 | 75 | 151 | C3H Transcription Factor Family | AT2G37950 | 35.955 | 7.56e-08 | 50.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan9g0837 | - | - | lang:109359054 | 482.641 |