Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0826 ATGGCTGATCCTCACGGAACTAATTCTTCTGGCAATAGGGACTTGGACCTGCTTCAATTATCTTTACCGGCAATTGCATCTCTTAAGAAAGGAGCATATCTACTGAAGTATGGACGAAGAGGGAAGCCAAAGTTTTGCCCATTTAGGCTTTCCAATGACGAGTCTCTACTCATATGGTACTCTGGGAAAGAGGAGAAACAACTTAAGCTCAGTACTGTTTCAATGATCATTCCTGGGCAGCGGACTGCAATATTTCGGCGGTATCCTCAGCCTGAAAAGGAATACCAATCATTTTCTCTTATATACAATGATAGATCCCTGGATGTGATATGTAAAGACAAGGATGAAGCTGAAATCTGGTTTGTTGGTCTTAAGGCATTAGTTACTCGATGTAACAATCACAGGCGAGGAAATGAAGCAAGATTTGCAAGTGTGTTATCTGACAGTCCACAAATTTGCTCACAGAGATATACTCCATCAGTTAAACCAGTTGACCCAGGAGATACCATCGGGTTTTCATTTGACAATTCGTTACATAATACATCAGGAAAACCTTTCTCTGAAATAATTTCATATCCTGCAGCTGGCAAGAGTTCCAGTCCAGCTGAATCAATTGCAAATTCGTCTTTACCTCCAGGGCCAGTCAATAACTCAAATCTAAATTCTTCACCTGAGCCATTTCGAGAAAGTGTATCTAGTGCTGTAAGTTCATTCACTTCATTGAGCCAGGGTTCTTACCAGGAAGATTTTGATGCTTTAAGTGATGTTTACATTTGGGGAGAAGATATTGGCAATGGAGTGCTTGGTGGTGGTGTGCATAGAGTTGAATCCTTATCTAATTCTGAGATGGATGCATTAATCCCCAAGGCACTGAAATCAAAAGTAGTTCTAGATGTCTACAGTATTGCTTGTGGTTCCAAGCATGCCGTTGTAGTTACTAAGCAAGGAGAGATATTTAGTTGGGGATATGAATCAGGAGGTAGGCTTGGGCTGGGTGTAGAAGCAAATGTTTCTCACCCTAAGCCCATTGACACTCTTAGCAATGTGAATATTGAATTAGTAGCATGTGGGGATTATCATACTTGTGCTATTACATTTGCTGGGGATCTTTACACTTGGGGTGATGGTACTCACAATTCTGGTTTGCTTGGGAATGGAAATGAAGTCAGTCACTGGATTCCGAAAAAAGTAAGTGGTGACATGGAGGGTGTACATATATCGTTTGTATCCTGTGGACCTTGGCATACAGCTATTGTGACATTAGCTGGCCAGTTGTTTACATTTGGGGATGGATCTTTTGGTGCCTTAGGTCATGGAGATCATAGTAGCACAGATATTCCTCGGGAAGTAGAAGCTTTGAAAGGATTGAGAACAACCTGGGTTTCTTGTGGTGTTTGGCACACTGCCTCTGTTGTTCAGGTCATAAATGAATCTATGGAATCTTCAATGCACTCACTCATTGGAAAACTTTTCGCCTGGGGTGATGGGGATGAAGGGCGACTTGGACATGTTGATAAGGAACCCAGACTAGTTCCTGATTGTGTAACGACATTGAATAATGAAAATATTTGTCGAGTGGCTTGTGGCCAAAATCTTACAATTGCATTGACAACCTCAGGACATGTATACACAATGGGCAGTGCTGCTTATGGACAACTTGGCTGTCCTGCATCTGATGGGAAAGTCCCTGGACGCGTTGAAGGTGAGCTTGCTGACAGTTTTGTAGATGATATTGCATGCGGCTCTTACCATGTTGCAGTCCTGACTTCTAAGGCAGAGGTTTACACCTGGGGAAAGGGTTTGAATGGGCAGTTAGGTCATGGAGACATTGATCACCGGGATAAACCTACACTTGTTCCTTTTTTAAAAGATAAGCAAGTGAAGAGTGTTGCTTGTGGTTCAAATTTCACAGCTGTTATATGTCTTCACAAATGGATATCGAGTGCTGACCATTCTGTGTGTTCTGCTTGTCGTAATCCATTTGGATTCATAAGAAAACGTCGTAATTGTTACAACTGTGGACTAGTGTTTTGCATAGGATGCAGTAGCAGGAAATCTACGAAAGCTTCACTTGCTCCAGATGCCAACAAGCCATTCCGGGTCTGTGATGACTGTTATTCTAAACTGAAGAAAGCTGAAGAATCTATATCCTTAGTTCAAACTCCTACCTCCAGAATTATGAGTGCAAATGACACTAGGGCTACTAAATTACAAGCATCACTATCAACGCTTGCACCTGTTGGTTCTATTGTTCAAACAGCAAACAGATACAAAAATCTTCCAGAATTGCATGATAACCATGTTTTTTCAGCTCTGAATGGAAAACTACGGTTGGGGACTCCTCCTAGAAAAGCATCAAATTCCCATTTTAGAACATCAAGGAAGCGCCATTCAATTTCTGTGCTTCCTTCTAGAGGGGCTTCTCAATCATCCTCTATTTCACCAAAGTCAGGCACACAACAGTCTTGTACAGATATCCATGATAATTCAAAGCACATGAATGACATTCTAAGTCAAGAAGTTATATGTTTAAGGGCACAGATTGAAGATCTTACTCATAAGTCCAACTGTCTTGAGGCTGAACTTGAGAGGACTTCAAAGCAATTGAAGCAAGTAACTGCAGTAGCTGCTGATGAAGCTGACAAATATATATCTGCCAAAGAGTTGATAAAAATGTTGACTGCTCAGTTGAAGGAAATGGTGCAAGTGCAAAGGCTGCTTGAAGGACATAATGCTGAGTCCATTGCAGACTTATATTCTAAAACCACTGTTAATACTCTAAACCAGTCGGTAGAGAAGAGCCATATGACAAATACTATCACTCCTTCAAATGGATCAAACAGCAATGCAGCAAATCGAATATTGCCTAATGGCAATAAAACACAAAGTGGAAAGGCAGAATGGGTGGTGCAAGATGAACCAGGCGTATACGTAACTTTGTCTTCCTTACCAGGTGATGGTAATGAACTTAAGAATGTCCGTTTCAGTAGGAGACATTTCACTGAAGAACAAGCTGAAAAGTGGTGGGCTGAAAATGGAACAAAAGTATTGGAGAGGCACAATGTAGTTGCTTTATTAAACTTTAAACAACAGTCACAAACAGTTTCCATGACCCTCTGA 3120 0.4122 MADPHGTNSSGNRDLDLLQLSLPAIASLKKGAYLLKYGRRGKPKFCPFRLSNDESLLIWYSGKEEKQLKLSTVSMIIPGQRTAIFRRYPQPEKEYQSFSLIYNDRSLDVICKDKDEAEIWFVGLKALVTRCNNHRRGNEARFASVLSDSPQICSQRYTPSVKPVDPGDTIGFSFDNSLHNTSGKPFSEIISYPAAGKSSSPAESIANSSLPPGPVNNSNLNSSPEPFRESVSSAVSSFTSLSQGSYQEDFDALSDVYIWGEDIGNGVLGGGVHRVESLSNSEMDALIPKALKSKVVLDVYSIACGSKHAVVVTKQGEIFSWGYESGGRLGLGVEANVSHPKPIDTLSNVNIELVACGDYHTCAITFAGDLYTWGDGTHNSGLLGNGNEVSHWIPKKVSGDMEGVHISFVSCGPWHTAIVTLAGQLFTFGDGSFGALGHGDHSSTDIPREVEALKGLRTTWVSCGVWHTASVVQVINESMESSMHSLIGKLFAWGDGDEGRLGHVDKEPRLVPDCVTTLNNENICRVACGQNLTIALTTSGHVYTMGSAAYGQLGCPASDGKVPGRVEGELADSFVDDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDIDHRDKPTLVPFLKDKQVKSVACGSNFTAVICLHKWISSADHSVCSACRNPFGFIRKRRNCYNCGLVFCIGCSSRKSTKASLAPDANKPFRVCDDCYSKLKKAEESISLVQTPTSRIMSANDTRATKLQASLSTLAPVGSIVQTANRYKNLPELHDNHVFSALNGKLRLGTPPRKASNSHFRTSRKRHSISVLPSRGASQSSSISPKSGTQQSCTDIHDNSKHMNDILSQEVICLRAQIEDLTHKSNCLEAELERTSKQLKQVTAVAADEADKYISAKELIKMLTAQLKEMVQVQRLLEGHNAESIADLYSKTTVNTLNQSVEKSHMTNTITPSNGSNSNAANRILPNGNKTQSGKAEWVVQDEPGVYVTLSSLPGDGNELKNVRFSRRHFTEEQAEKWWAENGTKVLERHNVVALLNFKQQSQTVSMTL* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0826 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 423 474 IPR000408 -
Lan9g0826 1039 CDD PH_PLC_plant-like 22 129 - -
Lan9g0826 1039 MobiDBLite consensus disorder prediction 936 961 - -
Lan9g0826 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 367 IPR000408 -
Lan9g0826 1039 ProSiteProfiles BRX domain profile. 966 1021 IPR013591 -
Lan9g0826 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 423 469 IPR000408 -
Lan9g0826 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 539 588 IPR000408 -
Lan9g0826 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 593 640 IPR000408 -
Lan9g0826 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 488 536 IPR000408 -
Lan9g0826 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 368 418 IPR000408 -
Lan9g0826 1039 Pfam Regulator of chromosome condensation (RCC1) repeat 316 364 IPR000408 -
Lan9g0826 1039 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 22 1019 - -
Lan9g0826 1039 MobiDBLite consensus disorder prediction 799 827 - -
Lan9g0826 1039 SUPERFAMILY RCC1/BLIP-II 254 645 IPR009091 -
Lan9g0826 1039 SUPERFAMILY PH domain-like 24 128 - -
Lan9g0826 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 592 643 IPR000408 -
Lan9g0826 1039 SMART fyve_4 642 711 IPR000306 GO:0046872
Lan9g0826 1039 MobiDBLite consensus disorder prediction 201 228 - -
Lan9g0826 1039 Coils Coil 834 875 - -
Lan9g0826 1039 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 648 710 IPR017455 -
Lan9g0826 1039 MobiDBLite consensus disorder prediction 779 828 - -
Lan9g0826 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 488 539 IPR000408 -
Lan9g0826 1039 Gene3D - 23 137 IPR011993 -
Lan9g0826 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 645 720 IPR013083 -
Lan9g0826 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 422 IPR000408 -
Lan9g0826 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 540 591 IPR000408 -
Lan9g0826 1039 Pfam Transcription factor regulating root and shoot growth via Pin3 965 1020 IPR013591 -
Lan9g0826 1039 PRINTS Chromosome condensation regulator RCC1 signature 299 312 IPR000408 -
Lan9g0826 1039 PRINTS Chromosome condensation regulator RCC1 signature 318 334 IPR000408 -
Lan9g0826 1039 PRINTS Chromosome condensation regulator RCC1 signature 368 384 IPR000408 -
Lan9g0826 1039 PRINTS Chromosome condensation regulator RCC1 signature 409 425 IPR000408 -
Lan9g0826 1039 PRINTS Chromosome condensation regulator RCC1 signature 425 439 IPR000408 -
Lan9g0826 1039 PRINTS Chromosome condensation regulator RCC1 signature 529 547 IPR000408 -
Lan9g0826 1039 PRINTS Chromosome condensation regulator RCC1 signature 587 608 IPR000408 -
Lan9g0826 1039 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 302 312 IPR000408 -
Lan9g0826 1039 SUPERFAMILY FYVE/PHD zinc finger 644 723 IPR011011 -
Lan9g0826 1039 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 22 1019 - -
Lan9g0826 1039 Gene3D - 213 378 IPR009091 -
Lan9g0826 1039 Gene3D - 379 644 IPR009091 -
Lan9g0826 1039 Pfam FYVE zinc finger 644 710 IPR000306 GO:0046872
Lan9g0826 1039 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 254 315 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0826 Lan-Chr9 13927634 13937905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0826 964 1022 Major Intrinsic Protein MIP AT1G31880 52.542 1.12e-14 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0826 - - lang:109355968 2096.24