Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0820 ATGGGTAACTGCTTAGGTTCTTCTGCTAAAGTTGATGCAACTCAGAGCTCTAGAAACACTTCTGCATCTGGAATGTCAAAAACTACTTCAAGCTTATCTATTACATCATATAGTGAAAAAAGCAATTCCTCAACAAGTCTTCCCACACCAAGGTCTGAGGGCGAAATCTTGTCTTCTCCCAATCTTAAGGCCTTCTCATTCAATGAGCTGAAGAATGCCACCAGAAATTTTCGCCCCGACAGTCTTCTTGGTGAAGGCGGATTTGGTTATGTTTACAAGGGATGGATTGATCAAAACACATTTACAGCTGCAAAACCTGGATCGGGAATGGTTGTTGCTGTGAAGAGGCTTAAGCCTGAAGGTTTCCAAGGCCATAAAGAGTGGTTGACTGAGGTTAACTACCTTGGGCAACTGCACCATCGTAATCTGGTTAAATTAATTGGTTACTGCTTGGAGGGAGAGAACCGGCTATTGGTCTACGAGTTTATGCCCAAAGGGAGCTTAGAGAATCATCTTTTTAGAAGAGGACTGCAGCCACTCTCCTGGGCAGTGAGGATGAAAGTGGCCATTGGTGCTGCCCGAGGACTCTCTTTTCTTCACAATGCCAAATCACAAGTCATATACCGCGATTTTAAAGCTTCTAACATCCTACTGGATGCTGAGTTCAATGCTAAACTCTCTGATTTCGGCTTAGCGAAGGCGGGTCCTACTGGTGATAGAACTCATGTGTCTACTCAAGTCATGGGTACGCAAGGATATGCAGCACCTGAATATGTGGCAACTGGCCGACTGACGGCCAAAAGTGATGTATACAGCTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGACGACGTGCTGTCGATAAAACAATGGCTGGTATGGAGCATAATCTTGTGGACTGGGCAATACCATATTTAGGCGATAAACGGAGACTGTTCCGGATCATGGATACCAAGTTGGAGGGTCAATATCCACAAAAAGGAGCCTTCATGGCTGCTACACTTGCTCTACAATGCCTTAATAGTGAAGGCAAGGCAAGACCTCCAATGACAGAGGTTTTAGCAACACTCGAACAGATTGAATCCCCAAAAAACGTGGGGCGGAATTCCCAATCAGAACATCAGAGAGGATTCCAGACCCCTGGAAGAAGATCTCCTGCGCCGAATCGGTCTCCAATGCGTCTGACTCCAACTGCATCCCCACTGCTGTCTCACCAGCAGTCTGCTCGTGTGCACTAA 1239 0.4609 MGNCLGSSAKVDATQSSRNTSASGMSKTTSSLSITSYSEKSNSSTSLPTPRSEGEILSSPNLKAFSFNELKNATRNFRPDSLLGEGGFGYVYKGWIDQNTFTAAKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHRNLVKLIGYCLEGENRLLVYEFMPKGSLENHLFRRGLQPLSWAVRMKVAIGAARGLSFLHNAKSQVIYRDFKASNILLDAEFNAKLSDFGLAKAGPTGDRTHVSTQVMGTQGYAAPEYVATGRLTAKSDVYSFGVVLLELLSGRRAVDKTMAGMEHNLVDWAIPYLGDKRRLFRIMDTKLEGQYPQKGAFMAATLALQCLNSEGKARPPMTEVLATLEQIESPKNVGRNSQSEHQRGFQTPGRRSPAPNRSPMRLTPTASPLLSHQQSARVH* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0820 412 MobiDBLite consensus disorder prediction 1 57 - -
Lan9g0820 412 ProSiteProfiles Protein kinase domain profile. 77 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g0820 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Lan9g0820 412 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
Lan9g0820 412 SUPERFAMILY Protein kinase-like (PK-like) 46 357 IPR011009 -
Lan9g0820 412 Coils Coil 411 412 - -
Lan9g0820 412 CDD STKc_IRAK 83 360 - -
Lan9g0820 412 PANTHER PROTEIN KINASE 2B, CHLOROPLASTIC 11 409 - -
Lan9g0820 412 Gene3D Phosphorylase Kinase; domain 1 52 162 - -
Lan9g0820 412 ProSitePatterns Protein kinases ATP-binding region signature. 83 115 IPR017441 GO:0005524
Lan9g0820 412 MobiDBLite consensus disorder prediction 362 412 - -
Lan9g0820 412 MobiDBLite consensus disorder prediction 361 412 - -
Lan9g0820 412 Pfam Protein tyrosine and serine/threonine kinase 81 356 IPR001245 GO:0004672|GO:0006468
Lan9g0820 412 PANTHER OS01G0588500 PROTEIN-RELATED 11 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0820 Lan-Chr9 13755185 13759870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0820 53 357 Glycoside Hydrolase AT3G07070 52.922 2.64e-110 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan9g0820 PK_Tyr_Ser-Thr 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0820 - - gmx:100809778 723.776