Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0812 ATGGCAAAATTATTCAGCTTTCTTTTCTTCTGTTTTATGGCCATCGTTCCTAGTTTTGATGCCAATGTGAAAGAGAGTGAGACTTATTGGCAAGAATATATGAAGACATTGGATGCATATTGGAGAGAAAAAGCAATAATTGCTGAAAAGGTTAACAAAGAAGCTTTTTGTCCCGACCCATATGCACTCTCAGGAAACCTAACCTCTAGTGTTAGCGAAATCATATTTGGCAGTAAAGGACGTAGGAACTTGAAGGGACAAAAGAAAGGTCCATGCATGGCAACCAACCCTATAGACAGGTGCTGGAGATGTGACCCAAATTGGGAAAAAACACGCCAAAAGCTAGCAGATTGTGTTCAAGGTTTTGGAAGAAACACAGTTGGTGGCAAAGGTGGTCCATTCTATGTGGTCACTGATTCCTCAGACAATGACATGCAGAACCCAAAACCAGGCACTATTCGCCATGCAGTCACAAGAAATGGACCATTATGGATCATCTTTGCACGTAGCATGGTCATTAGGCTCAACCAAGAGCTTATTATGACAAGTGACAAGACCATTGATGGAAGAGGTGCTGATGTTTATATTGCTGCTGGGGCTGGCATTACAATTCAGTATATCAAGAATGTGATCATTCATGGGATCAAGATTTATAATATTGTGGTTGGGAGTGGTGGAATGATTAGAAATTCTGAGGACCATTTTGGTCTTAGAACAATGAGTGATGGAGATGGAATTTCTATCTTTGGCTCTAGCCATGTTTGGATTGATCATGTTTCCATGAGAAAATGCCAAGATGGGTTGATAGATGCTGTTATGGGATCCACTGCGATTACCATTTCCAATAGTCATTTCACAGATCATAATGAGGCGATGTTGTTTGGTGCTAGTGATGGCTACTCAGGAGATCAGATAATGCAAATCACTTTAGCATTCAACCACTTTGGTAAGAGATTAATCCAAAGGATGCCAAGGTGCAGATGGGGTTTCATCCATGTTGTTAACAATGACTACACTCATTGGGAAATGTATGCCATTGGTGGTAGCCAACACCCAACCATTATTAGTGAGGGTAACAGATTTGTTGCCCCTAACAATATCAATGCTAAAGAGATAACAAAGAGGGATTATGCATCAGAAGAAGTGTGGAAAAACTGGCAATGGAGATCAATAAAAGATGAGTATATAAATGGAGCATTTTTCAGACAAGCAGGACCTGTTCTCACTAATAGGCCATTCACAAGGAAGGATATGATGTCAGCTAGGCCTGGTTCCTATGTAGGAAGGCTTACTCGTTATGCTGGCACCTTGAGATGTAGAGTGGGAATGCCTTGTTGA 1338 0.4096 MAKLFSFLFFCFMAIVPSFDANVKESETYWQEYMKTLDAYWREKAIIAEKVNKEAFCPDPYALSGNLTSSVSEIIFGSKGRRNLKGQKKGPCMATNPIDRCWRCDPNWEKTRQKLADCVQGFGRNTVGGKGGPFYVVTDSSDNDMQNPKPGTIRHAVTRNGPLWIIFARSMVIRLNQELIMTSDKTIDGRGADVYIAAGAGITIQYIKNVIIHGIKIYNIVVGSGGMIRNSEDHFGLRTMSDGDGISIFGSSHVWIDHVSMRKCQDGLIDAVMGSTAITISNSHFTDHNEAMLFGASDGYSGDQIMQITLAFNHFGKRLIQRMPRCRWGFIHVVNNDYTHWEMYAIGGSQHPTIISEGNRFVAPNNINAKEITKRDYASEEVWKNWQWRSIKDEYINGAFFRQAGPVLTNRPFTRKDMMSARPGSYVGRLTRYAGTLRCRVGMPC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0812 445 SMART amb_all 170 367 IPR002022 -
Lan9g0812 445 SUPERFAMILY Pectin lyase-like 96 436 IPR011050 -
Lan9g0812 445 Pfam Pectate lyase 180 361 IPR002022 -
Lan9g0812 445 Gene3D - 95 438 IPR012334 -
Lan9g0812 445 PANTHER PECTATE LYASE 6 445 - -
Lan9g0812 445 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Lan9g0812 445 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Lan9g0812 445 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Lan9g0812 445 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Lan9g0812 445 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Lan9g0812 445 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Lan9g0812 445 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Lan9g0812 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Lan9g0812 445 PANTHER PECTATE LYASE 18-RELATED 6 445 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0812 Lan-Chr9 13627371 13630713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0812 1 445 Polysaccharide Lyase AT5G15110 52.183 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0812 K01728 - gmx:100796307 713.375