Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0793 ATGGGTAGAGGGAGAGTTGAGTTGAAGAGGATAGAGAACAAAATCAACCGCCAGGTTACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCATATGAGCTTTCAGTTCTCTGTGATGCTGAGGTTGCCCTCATCATTTTCTCCAGCAGAGGAAAACTATGTGAATTTGGTAGTGCTGGCATTACCAAAACTATTGAGCGATACCAACGTTGCTCTTTTACTCCTCAAGATGACCATGTAGAATGTGAAACTCAGAGCTGGTACCAAGAGGTGTCAAAGCTGAAGGCCAAGTATGAGTCTCTTCAAAGGACTCAGAGGCATTTGCTTGGGGAGGATCTTGGACCATTGAGCATAAAGGAGCTGCAGAATCTTGAGAAACAGCTTGAAGGAGCTTTAGCACAAGCTAGACAAAGGAAGACACAAATCATGATTGAACAAATGGAAGATCTTCGCAGGAAGGAACGCCATCTTGGAGACATGAATAAGCTGCTTAGACTCAAGCTTGAAGCAGAGGGATATAATTTTAAAGCGATGGAAAACTTGTGGAGCTCAACTTCAGGTGTTGGAAATGATAGCTTTCCCTTCCAACCTTCTGAAACCAACCCTATGGAGTGCCAACCAGAACCTTTCTTGCAAATAGGGTACCAACAATATTTTCAAGGTGAGACATCGAATGTTAATGTTCCAAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGGTTCTTTGA 738 0.4282 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLCEFGSAGITKTIERYQRCSFTPQDDHVECETQSWYQEVSKLKAKYESLQRTQRHLLGEDLGPLSIKELQNLEKQLEGALAQARQRKTQIMIEQMEDLRRKERHLGDMNKLLRLKLEAEGYNFKAMENLWSSTSGVGNDSFPFQPSETNPMECQPEPFLQIGYQQYFQGETSNVNVPKSMACETNFMQGWVL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0793 245 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan9g0793 245 PANTHER MADS-BOX TRANSCRIPTION FACTOR 17 1 227 - -
Lan9g0793 245 PANTHER MADS BOX PROTEIN 1 227 - -
Lan9g0793 245 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan9g0793 245 Pfam K-box region 84 169 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan9g0793 245 Coils Coil 119 142 - -
Lan9g0793 245 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan9g0793 245 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan9g0793 245 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan9g0793 245 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan9g0793 245 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan9g0793 245 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Lan9g0793 245 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Lan9g0793 245 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977|GO:0045944
Lan9g0793 245 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0793 Lan-Chr9 13199831 13206243 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0793 1 245 MADS-box Gene Family AT2G45650 66.403 7.41e-114 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan9g0793 K-box 3.9e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0793 K09264 - gmx:100820061 412.535