Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0792 ATGAATAAGGAAAGGGAAGAAGAAATGGTGAGAGGAAAGACTCAGTTGAAGCGTATAGAGAATGCTACTAGTAGGCAAGTAACCTTTTCAAAGAGGCGTAATGGGTTGCTGAAGAAGGCTTTTGAGCTATCAGTTCTATGTGATGCTGAAGTTGCTCTTATTGTTTTCTCTCAAAGAGGCAAGCTTTATGAATTTGCAAGCTCCAGCATGCAGGAGACAATTGAACGATACCGCAGGCATGCCAAGGATACTGCAACAACACCCAGATCAGTTGAACAAAATATGCAGCATTTGAAGCAAGAAGCATCAATCATGTCGAAGAAGATTGACCTTCTTGAAGCTTCAAAAAGGAAACTCTTAGGAGAAGGTTTGGGTTCATGCTCCATTGATGAACTGCAAGAGATAGAAAAACAGTTGGAGAGGAGTGTAAGCAATGTTCGAGCAAGAAAGACTCAGGTTTTCAATGAGCAAATTCAGCGACTAAAAGAAAAGGAAAAAGCCTTAGATGTTGAAAATTTCAGGCTCTCTGAGAAGGTGAAGTATGGTATTCATCCAGAGCCAGCAACAAAGGATGAAAGAGGAAATCAACTCCAATACTATGAAGAAAGTAGTCCTGGTAATTCAGATATAGATACTGGATTGTTCATAGGACTTCCAGAAACAAGACCAAGGCGAATTTCTCCAACTCAACCCTTTAGTTAA 702 0.4017 MNKEREEEMVRGKTQLKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSQRGKLYEFASSSMQETIERYRRHAKDTATTPRSVEQNMQHLKQEASIMSKKIDLLEASKRKLLGEGLGSCSIDELQEIEKQLERSVSNVRARKTQVFNEQIQRLKEKEKALDVENFRLSEKVKYGIHPEPATKDERGNQLQYYEESSPGNSDIDTGLFIGLPETRPRRISPTQPFS* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0792 233 ProSitePatterns MADS-box domain signature. 11 65 IPR002100 GO:0003677|GO:0046983
Lan9g0792 233 CDD MADS_MEF2_like 11 86 IPR033896 GO:0000977|GO:0045944
Lan9g0792 233 Gene3D - 21 105 IPR036879 GO:0003677|GO:0046983
Lan9g0792 233 PANTHER MADS-BOX PROTEIN SOC1 9 220 - -
Lan9g0792 233 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 18 65 IPR002100 GO:0003677|GO:0046983
Lan9g0792 233 MobiDBLite consensus disorder prediction 184 233 - -
Lan9g0792 233 SMART madsneu2 9 68 IPR002100 GO:0003677|GO:0046983
Lan9g0792 233 Coils Coil 95 115 - -
Lan9g0792 233 ProSiteProfiles MADS-box domain profile. 9 69 IPR002100 GO:0003677|GO:0046983
Lan9g0792 233 Pfam K-box region 92 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan9g0792 233 SUPERFAMILY SRF-like 11 83 IPR036879 GO:0003677|GO:0046983
Lan9g0792 233 ProSiteProfiles K-box domain profile. 95 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan9g0792 233 PRINTS MADS domain signature 11 31 IPR002100 GO:0003677|GO:0046983
Lan9g0792 233 PRINTS MADS domain signature 31 46 IPR002100 GO:0003677|GO:0046983
Lan9g0792 233 PRINTS MADS domain signature 46 67 IPR002100 GO:0003677|GO:0046983
Lan9g0792 233 Coils Coil 2 22 - -
Lan9g0792 233 PANTHER MADS BOX PROTEIN 9 220 - -
Lan9g0792 233 Coils Coil 129 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0792 Lan-Chr9 13160406 13173160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0792 9 166 MADS-box Gene Family AT2G45660 75.949 2.75e-83 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan9g0792 K-box 1.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0792 - - gmx:100807963 306.219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0990 13 14317650 14325743 Lan9g0792 9 13160406 13173160 PCT
Lan9g0792 9 13160406 13173160 Lan13g0990 13 14317650 14325743 PCT