Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0767 ATGTCATTCACTGGAACTTTGGACAAATGCAAGGCTTGTGATAAGACTGTTTATGTGGTTGACTTGTTAACTCTTGAAGGCATTCCTTACCATAAAAGTTGCTTCAAATGCACACATTGCAATGGAGTACTTACGATGAACACATACTCTTCAATGGATGGTGTCCTCTATTGCAGGACACATTTTGAACAACTTTACAAGGAATCCGGCAATTTTAGCAAGAACTTTCAAAATGGAAAGTCTTCTGAGAGGCACCACGATTTGAATAGGACTCCCAGTAAAGTCTCTTCCATGTTCAGTGGAACCTTAGACAAATGCTCAGTTTGCACAAAAACAGTCTATCCTCTGGAAAAGATGACACTGGAAGGGGAATGCTTTCACATGAATTGCTTTAGGTGTGCTCATGGAGGGTGTCACCTTACACATTCCTCATATGCTGCTCTAGATGGTGTCCTATACTGTAGGGTCCATTTTTCACAACTTTTCATGGAGAAAGGGAACTATAGCCATGTACTACAAGCTGCTGCACACAGAAGAAATGGTTCTTCTACACCTCCTGAAACAATTGAGTTCCCTTCACCAGAGCCACAACCTGAGGACAAAAAAGAAGAACAAGAAGAAGAAAAAGAATCTTCTTGA 639 0.4085 MSFTGTLDKCKACDKTVYVVDLLTLEGIPYHKSCFKCTHCNGVLTMNTYSSMDGVLYCRTHFEQLYKESGNFSKNFQNGKSSERHHDLNRTPSKVSSMFSGTLDKCSVCTKTVYPLEKMTLEGECFHMNCFRCAHGGCHLTHSSYAALDGVLYCRVHFSQLFMEKGNYSHVLQAAAHRRNGSSTPPETIEFPSPEPQPEDKKEEQEEEKESS* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0767 212 Pfam LIM domain 10 64 IPR001781 -
Lan9g0767 212 Pfam LIM domain 106 161 IPR001781 -
Lan9g0767 212 MobiDBLite consensus disorder prediction 176 212 - -
Lan9g0767 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Lan9g0767 212 Gene3D Cysteine Rich Protein 6 74 - -
Lan9g0767 212 Gene3D Cysteine Rich Protein 102 170 - -
Lan9g0767 212 MobiDBLite consensus disorder prediction 194 212 - -
Lan9g0767 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 132 171 - -
Lan9g0767 212 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 207 - -
Lan9g0767 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Lan9g0767 212 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 98 131 - -
Lan9g0767 212 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Lan9g0767 212 ProSiteProfiles LIM domain profile. 104 164 IPR001781 -
Lan9g0767 212 PANTHER OS06G0237300 PROTEIN 1 207 IPR045268 GO:0051015
Lan9g0767 212 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Lan9g0767 212 SMART lim_4 105 157 IPR001781 -
Lan9g0767 212 SMART lim_4 9 61 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0767 Lan-Chr9 12555377 12557363 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Lan9g0767 LIM 4.7e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0767 - K09377 gmx:100800234 349.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0928 11 9443082 9444937 Lan9g0767 9 12555377 12557363 LSH