Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0765 ATGGACAATAGTAACAACAATAACAGAGGGAGATACCCACCTGGTATAGGTTATGGTCGTGGTGGTGGTGGTGGAGGGTTCAATCTGAACCCTAACCAAAATCAAAACGCAGCGTTTCAACCAAGGAACAATTATCAGCAACAGCAGAATCAACAGCAACACTATGTGCAGAGGCATTTGGTTCCGCAGCAGCAGCAACAACAGCAGCAGCAACAGTGGCTGAGAAGGGCACAGTTGGGTGGTGGTGCAGATTCAAATGTCGTCGACGAGGTCGAAAAGAATGTCCAGAATGAAGCAAATGACTCAAGTTCACAAGATTGGAAGGCAAGACTAAAGGCTCCACCAGCTGATACACGCTATAAGACAGAGGATGTGACAGCGACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCTTCTCCTATCCAAGAAGAAAGCATTCCAATTGTCCTTACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACAGGCAAAACAGCCGCATTTTGCATTCCTGCATTGGAAAAAATTGATCAGGATACTAATGTTATTCAAGCTGTCATACTGGTCCCTACTCGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTGAAGTTATGGTCACAACAGGTGGTACCAGCTTGAAAGATGATATAATGCGCTTATATCAACCAGTTCATTTACTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCTAAGAAGGGTGTTTGTATTCTGAAAGATTGCACTATGCTTGTTATGGACGAGGCTGATAAGCTTTTGTCCCCGGAGTTCCAACCTTCTATTCAGCATCTGATTCAATTTCTACCTTCAAACCGTCAAATTCTAATGTTTTCAGCTACATTTCCTGTTACTGTAAAGGACTTCAAAGATAGATATCTTCAAAAACCATATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATACTATGCATTTGTCGAAGAGAGGCAGAAAGTCCACTGCCTGAATACTCTATTTTCTAAGCTGCAAATAAACCAGTCGATCATCTTCTGCAATTCAGTGAACCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGTTATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGACCATCGTAATAGAGTATTTCATGACTTCCGCAATGGTGCATGCCGAAATCTTGTTTGTACTGACCTTTTTACTAGGGGAATAGACATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCGAAGAACTCAGAAACTTATTTGCACAGGGTTGGTCGTTCAGGGAGGTTTGGACACCTTGGTCTAGCAGTGAACTTGATCACTTATGAGGATCGCTTTAACTTATATAGGATTGAACAGGAACTTGGCACTGAAATAAAGCAAATTCCTCCATTTATTGATCAGGCGGTTTATTGCCGGTGA 1518 0.4104 MDNSNNNNRGRYPPGIGYGRGGGGGGFNLNPNQNQNAAFQPRNNYQQQQNQQQHYVQRHLVPQQQQQQQQQQWLRRAQLGGGADSNVVDEVEKNVQNEANDSSSQDWKARLKAPPADTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIVLTGSDILARAKNGTGKTAAFCIPALEKIDQDTNVIQAVILVPTRELALQTSQVCKELGKHLKIEVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCTMLVMDEADKLLSPEFQPSIQHLIQFLPSNRQILMFSATFPVTVKDFKDRYLQKPYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPFIDQAVYCR* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0765 505 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 8 505 - -
Lan9g0765 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 201 485 IPR027417 -
Lan9g0765 505 SMART ultradead3 150 346 IPR014001 -
Lan9g0765 505 Gene3D - 336 504 IPR027417 -
Lan9g0765 505 Pfam DEAD/DEAH box helicase 156 320 IPR011545 GO:0003676|GO:0005524
Lan9g0765 505 SMART helicmild6 382 463 IPR001650 -
Lan9g0765 505 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 131 159 IPR014014 GO:0003724
Lan9g0765 505 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 6 8 505 - -
Lan9g0765 505 MobiDBLite consensus disorder prediction 1 68 - -
Lan9g0765 505 Pfam Helicase conserved C-terminal domain 357 463 IPR001650 -
Lan9g0765 505 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 162 332 IPR014001 -
Lan9g0765 505 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 278 286 IPR000629 -
Lan9g0765 505 MobiDBLite consensus disorder prediction 27 68 - -
Lan9g0765 505 CDD SF2_C_DEAD 343 472 - -
Lan9g0765 505 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 342 502 IPR001650 -
Lan9g0765 505 CDD DEADc_DDX6 133 333 - -
Lan9g0765 505 Gene3D - 87 335 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0765 Lan-Chr9 12529673 12536695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0765 131 495 Eukaryotic Initiation Factors Gene Family AT3G19760 38.420 2.42e-94 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0765 K12614 - tcc:18614173 833.943