Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0762 ATGGATAGAGGGGACCAGATGACGTTATCCGGTTCTGCATCTTACTATATGCAGAGAGAGATGCCTGGTTCTGGAACACAACCTGAATTGCATAATTCACCTAATATTCGGCAAATGTCGAATCCCAATTTACCATTTCAATCAACCATTGGGGGTGGTACGCTCGGATCTACATTTCCAATGGACTCTACAGGAATTCAATCTCAGTCGGTCAATGTAGGAGCTCCTTCCGGGGTTCCATCTGGGGAGCCTGTCAAAAGGAAGAGAGGAAGGCCTAGGAAATATGGAACTGATGGAACTGTGTCATTGACATTGACTCCAAGTTCGAAACCGGCTAGTCATCCTGGAACCTTGACACAAACACAAAGCCAAAAACGAGGTCGAGGCCGCCCACCTGGGTCCGGGAAGAAACAGCAGCTGGCTTCTGTTGGTAAATCTCTTGGTGAATTGATGTCTGGTTCAGCTGGAATGAGTTTCACTCCTCATATCATCACCGTTGGAGTTGGAGAAGACATTGCAACGAAAATTATGGCATTTTTACAGCAAGGCCCTAGAGCTATATGCATTTTGTCTGCCACTGGTACTGTATCTACAGTCACACTTCGTCAGCCGTCAACTTCAGGTGGCACTGTCACATATGAGGGGAGTTTCGAGATATTGTGCCTATCCGGCTCTTACTTGCTTACTGATGGTGGTGGCTCCCGCAATCGAACTGGTGGGCTGAGTGTTTCCCTCGCCAGTCCTGATGGCCGTGTCATTGGTGGAGGAATTGGCGGAGTGCTTAGTGCTTCAAGTCAAGTTCAGGTTATAATTGGGAGCTTTATATGGGGTGGATCAAAGGCAAAGAAAATGAGAAAGGAAGCTTCAGAAGGTGCAGAAGTTGCTATGGAGTCAGATCATCAAGCTGCTCATAATCCGGCTACAGTGAATAGCATGTCCCCAAATCGAAATTTTACTCCAACCTCATCACCAATCCCTTGGCCTGCATCGCGCCAATTGGATATGCGAAATTCGCATATTGACATCGATTTAATGCGCGGGTGA 1044 0.4722 MDRGDQMTLSGSASYYMQREMPGSGTQPELHNSPNIRQMSNPNLPFQSTIGGGTLGSTFPMDSTGIQSQSVNVGAPSGVPSGEPVKRKRGRPRKYGTDGTVSLTLTPSSKPASHPGTLTQTQSQKRGRGRPPGSGKKQQLASVGKSLGELMSGSAGMSFTPHIITVGVGEDIATKIMAFLQQGPRAICILSATGTVSTVTLRQPSTSGGTVTYEGSFEILCLSGSYLLTDGGGSRNRTGGLSVSLASPDGRVIGGGIGGVLSASSQVQVIIGSFIWGGSKAKKMRKEASEGAEVAMESDHQAAHNPATVNSMSPNRNFTPTSSPIPWPASRQLDMRNSHIDIDLMRG* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0762 347 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Lan9g0762 347 SMART AT_hook_2 86 98 IPR017956 GO:0003677
Lan9g0762 347 SUPERFAMILY AF0104/ALDC/Ptd012-like 158 276 - -
Lan9g0762 347 CDD DUF296 160 249 IPR005175 -
Lan9g0762 347 MobiDBLite consensus disorder prediction 288 330 - -
Lan9g0762 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 322 - -
Lan9g0762 347 MobiDBLite consensus disorder prediction 1 142 - -
Lan9g0762 347 MobiDBLite consensus disorder prediction 99 128 - -
Lan9g0762 347 Gene3D - 161 299 - -
Lan9g0762 347 MobiDBLite consensus disorder prediction 7 76 - -
Lan9g0762 347 MobiDBLite consensus disorder prediction 303 328 - -
Lan9g0762 347 ProSiteProfiles PPC domain profile profile. 153 297 IPR005175 -
Lan9g0762 347 Pfam Plants and Prokaryotes Conserved (PCC) domain 161 274 IPR005175 -
Lan9g0762 347 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 32 322 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0762 Lan-Chr9 12377507 12383832 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0762 1 347 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.136 2.48e-87 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0762 - - gmx:100783475 504.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0937 11 9515676 9521289 Lan9g0762 9 12377507 12383832 LSH