Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0730 ATGGTGGAAGTTAGCGACGAATTTTCCGGCACCATTTGTTCAATTTGCTACGAAGCTCTCAAACCAATTACCGAAGACCTTCAATCCATCACTATATGCGGCCACGTTTTCCATGAACTCTGTTTGCAGCAATGGTTCGAGTATTCGAAAGCGAAGAAGCACACTTGCCCCGTTTGTAAACAGAGTTGCAAGACCAACGATGCTTGCAGGCTTTATTTTCAATCGGTTGGTGAAGGAAATGAAGCTGTTCCTTCTCAGAAACCCATTGATTTTCAGGAAGATGCTGGGGTTTTGCGCAAAGAAGTGAAGTTGTTGGAGGTTAAGGTTTCAGGGCTTAGTTCTCAATTGGAGAGGCAAGGAAAAGAGTTAGAAGATGTAACCCATGAGCTTTGTGCTTGCAAGAAGCAAGCGAAAATAGATATAGCATTAAAAAAGGAGGCTTTGAATGAAAAAGCAACCTTACAATTTCAGCTTCGTAAGAAGTCGGAGGAACTTGAGAAGTCAAGTTTTGAGCGTTTTAGATTAGAAGAAAGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTTTCTGATCTGGACCTTGATGAAGAGGACATCCTGAAGCTTGCCACTTTGGGTAATGGCGCAAACAGTAAAGATACAATCGACACATTAAAAAAATCTCTGGTCTTGCGGAACAAGAGTTACAAAGAATTGATGGCCAAGTGCAATCTTCTTGGAAGAGGTGAGGCTCGTTATTGCAAAATGCTCGAGAAGGCTAAAGAGAAGATCACTAAACTCAAGGCGAGGGTGCAAGAGCTGCAAACAACTGCTGAAGTAAAAGAGAGTGAATATCTGATGTTTCATAAAGTTTCAAAGAAAGCAAATTTTTCAAAGACTCTTGAAAACAATATAAATTCTAATTATGATGTATTGGCATCTAGCAAATATTCATCGAAAGAGCAATGGAAACAAATTTCGACACCCCAATCTGGAAAGGATCTGAGTTTGAACAATGATAGTAAATATGGACATTCTTTGAATATAGAGAACTCATATGCTGTTGAAAATAAAGCTCTGAACTTTGGCAGCGGAAGTAAAACTACCTTGTCTATTGTTAAAGAGAGAGAATTTATCTCAATTGATGATGATTTAGAATTTACTAAACCTTTGCTTCAACATCCAAAACACAACAACAAAGATCAAGACTTGGATGATGTTGCCCTTAGAAAACCCACTCTAGTGAAGCCAGAGGGAGCAATGCAAGGAAAATGCAATTTGGCTGAATCTTCAAGAATTGATATTGACATTGAAATTCCTAACATATCTGCTGCTGTTATGGATGATGTGACATTACCATCTAATGTTAACCAAGTTCAGCCCACAATTAACATTAGAAAGGAGTCACCATTGGGACTTTCAAATTCAGGTGGCATATGCTTTTCTGGTGGATTGCTTGGTCCTGATGGAACTAATCGATTCTTGGGTAAATGGTGCAAGCGTGGACAAAACAGCGAATCAACGTCTGCAAATGGTTCAGGTAATGGGGACTTGATAGCTGTTGGGGCTGATGGTAGAGGTGGCAGAATTAAAGCTCTAAGGTCTTCAAATCAAACCTTCTCTGATGGTAAGGAAAGCTCATTATGTTCAAAAAGGTTAAAGTTAGGATCTAAGACAAATACTTTGCAATCCAAGGGGTGCTTGCAGATAGAACACTTCTTTGGCAGGGTCACTCAGTAA 1728 0.3935 MVEVSDEFSGTICSICYEALKPITEDLQSITICGHVFHELCLQQWFEYSKAKKHTCPVCKQSCKTNDACRLYFQSVGEGNEAVPSQKPIDFQEDAGVLRKEVKLLEVKVSGLSSQLERQGKELEDVTHELCACKKQAKIDIALKKEALNEKATLQFQLRKKSEELEKSSFERFRLEERNMALAKELAALKLVSDLDLDEEDILKLATLGNGANSKDTIDTLKKSLVLRNKSYKELMAKCNLLGRGEARYCKMLEKAKEKITKLKARVQELQTTAEVKESEYLMFHKVSKKANFSKTLENNINSNYDVLASSKYSSKEQWKQISTPQSGKDLSLNNDSKYGHSLNIENSYAVENKALNFGSGSKTTLSIVKEREFISIDDDLEFTKPLLQHPKHNNKDQDLDDVALRKPTLVKPEGAMQGKCNLAESSRIDIDIEIPNISAAVMDDVTLPSNVNQVQPTINIRKESPLGLSNSGGICFSGGLLGPDGTNRFLGKWCKRGQNSESTSANGSGNGDLIAVGADGRGGRIKALRSSNQTFSDGKESSLCSKRLKLGSKTNTLQSKGCLQIEHFFGRVTQ* 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0730 575 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 574 - -
Lan9g0730 575 SUPERFAMILY RING/U-box 8 66 - -
Lan9g0730 575 Coils Coil 144 164 - -
Lan9g0730 575 Pfam Ring finger domain 12 60 IPR001841 -
Lan9g0730 575 ProSiteProfiles Zinc finger RING-type profile. 13 60 IPR001841 -
Lan9g0730 575 SMART ring_2 13 59 IPR001841 -
Lan9g0730 575 Coils Coil 246 280 - -
Lan9g0730 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 170 IPR013083 -
Lan9g0730 575 SMART ringv_2 12 60 IPR011016 GO:0008270
Lan9g0730 575 CDD RING-H2 13 60 - -
Lan9g0730 575 PANTHER RING ZINC FINGER PROTEIN-RELATED 3 574 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0730 Lan-Chr9 11551214 11555878 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0730 459 575 C3H Transcription Factor Family AT4G01270 46.281 6.73e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0730 K11985 - gmx:100812811 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0963 11 10033518 10037899 Lan9g0730 9 11551214 11555878 LSH