Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0724 ATGTCGGCGGACGAAATGGATGGTAGCTCTGAGTGGAGCTGGGAGCAGGATAAAGCATTTGAAAGTGCCTTGGTGAATCATCCGGAGGACGCTCCAGATCGATGGGAGAAGATTGCGGCTGATGTTTCAGGGAAAACTGTAGAGGAAATTAAACAGCATTATGAGCTCTTGGTTGAAGATATTAACCAGATCGAATCTGGTTGTGTGCCTCTTCCATCTTATAATTCCTCTTCAGAGGGCTCAGCAAGCCAGGCTAGTGATGAAGGAGCTGGCAAGAAGGGTGGTCATCACAATGGTGAGTCTAATCATGGAACTAAGGCTTCAAGATCAGATCAAGAACGGCGAAAGGGTATTGCTTGGACAGAGGATGAACACAGGTTATTTCTTCTTGGCTTGGAAAAGTATGGAAAAGGTGACTGGCGAAGTATATCACGGAACTTTGTGGTTACAAGAACCCCTACACAAGTGGCGAGTCATGCCCAAAAATACTTCATTCGTTTGAACTCAATGAATAAAGATAGAAGGCGGTCCAGCATACACGATATCACCAGTGTCAATAACGGAGATGTTTCGGCACCACAAGCGCCAATTACTGGTCAAACGAATGGTCCAGCAGGCAATTCTACTTGCAAATCAGGCAAACAAGCGCCTCCAGCCTCAACTGGGGTACCAAGCATAGGAATATATGCTGCTCCTACCATCGGACAACCTATAGGAGGACCCCTAGTATCTGCTGTTGGAACCCCGGTGAATCTTCCCGCCCCTGGGCACATGGCATATGGTATCCGAGCCCCAGTCCCTGGTGCAGTTGTTCCTGGTGCGCCGACGAACATTGTTCCTATGACATACCCTATGCCGCACACTTCCGCCCCGCACAAGAAATAA 885 0.4836 MSADEMDGSSEWSWEQDKAFESALVNHPEDAPDRWEKIAADVSGKTVEEIKQHYELLVEDINQIESGCVPLPSYNSSSEGSASQASDEGAGKKGGHHNGESNHGTKASRSDQERRKGIAWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSAPQAPITGQTNGPAGNSTCKSGKQAPPASTGVPSIGIYAAPTIGQPIGGPLVSAVGTPVNLPAPGHMAYGIRAPVPGAVVPGAPTNIVPMTYPMPHTSAPHKK* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0724 294 CDD SANT 11 58 IPR001005 -
Lan9g0724 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 168 IPR017930 -
Lan9g0724 294 ProSiteProfiles SANT domain profile. 120 168 IPR017884 -
Lan9g0724 294 ProSiteProfiles Myb-like domain profile. 10 58 IPR001005 -
Lan9g0724 294 SUPERFAMILY Homeodomain-like 114 169 IPR009057 -
Lan9g0724 294 CDD SANT 119 164 IPR001005 -
Lan9g0724 294 PANTHER HOMEODOMAIN-LIKE TRANSCRIPTIONAL REGULATOR-RELATED 7 280 - -
Lan9g0724 294 Pfam Myb-like DNA-binding domain 119 164 IPR001005 -
Lan9g0724 294 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Lan9g0724 294 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 116 166 IPR006447 GO:0003677
Lan9g0724 294 MobiDBLite consensus disorder prediction 183 219 - -
Lan9g0724 294 Gene3D - 118 170 - -
Lan9g0724 294 SUPERFAMILY Homeodomain-like 10 66 IPR009057 -
Lan9g0724 294 PANTHER TRANSCRIPTION FACTOR KUA1 7 280 - -
Lan9g0724 294 SMART sant 8 60 IPR001005 -
Lan9g0724 294 SMART sant 116 166 IPR001005 -
Lan9g0724 294 MobiDBLite consensus disorder prediction 72 116 - -
Lan9g0724 294 MobiDBLite consensus disorder prediction 90 116 - -
Lan9g0724 294 ProSiteProfiles SANT domain profile. 7 62 IPR017884 -
Lan9g0724 294 MobiDBLite consensus disorder prediction 1 32 - -
Lan9g0724 294 Gene3D - 5 71 - -
Lan9g0724 294 ProSiteProfiles Myb-like domain profile. 112 164 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0724 Lan-Chr9 11302162 11310593 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan9g0724 Myb_DNA-binding 2.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0724 - - gmx:100779792 500.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1085 11 13965049 13972721 Lan9g0724 9 11302162 11310593 LSH
Lan2g0130 2 1108297 1114882 Lan9g0724 9 11302162 11310593 LSH