Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0711 TTTCCCCTTCATTCATCACTTGATGCTAAGTTCTCTACGTTTGGTTTCAATAGTACTCTTCCTTTCACTTCATCAATGATCAGCATGTTGAATTGCCCAACATATTCATCATCTATAGCTGGGAAAGAAAGGAGTGATGGTGGCACCCATGTTAACGCTGGTTCTGGTGCAACTAACATGAACGTTGCTTGTAATTGGTCAGAAAATATCATTGATTCTTGGAATAATATGGTAGAAACCGCAACATATGTTAAACAATTACTCGATCCATATCCAAGTCTTAAAGAGGTAGTTATTCCAGTTGGTACTACATTAACCGCTACTCTAATAGCTTGGGTTGTGATGCCTAAGATTTTGAGGAAATTTCACAAATATGCAATGCAAACTCCTGTTTCTGTATTTCCTGTGAACATATCATGGGACCCAGTTCCTTATGATAAAAGCTTTTGGGGTGCCCTAGAAGATCCAGTGAGATATTTAGTTACCTTCATAGCATTCACACAATTTGGTGTAATGGTAGCTCCAACAACTATAGCTTCTCAATATCTTGAACCAGCTTGGAGGGGTGCAGTGATACTTTCATTTGTCTGGTTTTTGCATAGATGGAAAACGAATGTGTTTGCACGTACATTGTCTGGTCAAATATTATTTGGGCTTGATAGAGAGAAATTGCTCACTCTAGATAAAATATCATCTATTGGTCTAATTTTGATTGGTATGGTGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAGTCTATTGTAACTGTTGGTGGTATAGGAGGAGTTGCTACTGCTTTTGCAGCCAAAGACATTCTAGGCAATGTGTTCAGTGGTTTATCTATGCAGTTTTCCAAGCCCTTTTCAATTGGAGATACTATAAAAGCTGGTCCTGTAGAGGGTCAAGTGATGGAAATGGGTCTTACTACAACATCATTGCTTAGTGATGAGAAGTTCCCAGTCATAGTGCCAAACTCATTTTTTTCTAGTGAGGTTATAGTGAACAAGTCCCGTGCCGAATATCGCGCCATTGTTACCAAAATTCCTCTTCATATAGAGTCTTTAAGCAAGATTCCCCAGATATCGGATGACGTGAAGAGCATGCTAAGATCAAATTCGAAGGTTTTCTTAGGAACAGATGCTCCATATTGTTTCTTGTCGTGTATAGAAAGTTCATTGGCCGAATTGTCTCTCGGATACAACCTCAAACAAATGCCTAAAGATGAGTTATACTCTGCACAACAAGATATTCTCCTGCAGACAGTTCATATCATTATGAATCATGGTGCTTCTCTTGGGAGCACAATGCAAGACGTGTTGGCTAAGTGA 1329 0.3958 FPLHSSLDAKFSTFGFNSTLPFTSSMISMLNCPTYSSSIAGKERSDGGTHVNAGSGATNMNVACNWSENIIDSWNNMVETATYVKQLLDPYPSLKEVVIPVGTTLTATLIAWVVMPKILRKFHKYAMQTPVSVFPVNISWDPVPYDKSFWGALEDPVRYLVTFIAFTQFGVMVAPTTIASQYLEPAWRGAVILSFVWFLHRWKTNVFARTLSGQILFGLDREKLLTLDKISSIGLILIGMVALAEACGVAVQSIVTVGGIGGVATAFAAKDILGNVFSGLSMQFSKPFSIGDTIKAGPVEGQVMEMGLTTTSLLSDEKFPVIVPNSFFSSEVIVNKSRAEYRAIVTKIPLHIESLSKIPQISDDVKSMLRSNSKVFLGTDAPYCFLSCIESSLAELSLGYNLKQMPKDELYSAQQDILLQTVHIIMNHGASLGSTMQDVLAK* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0711 442 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 187 270 IPR011014 GO:0016020
Lan9g0711 442 Pfam Mechanosensitive ion channel 229 430 IPR006685 GO:0016020|GO:0055085
Lan9g0711 442 Gene3D - 287 335 IPR023408 -
Lan9g0711 442 Gene3D - 187 286 - -
Lan9g0711 442 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 62 438 - -
Lan9g0711 442 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 62 438 - -
Lan9g0711 442 SUPERFAMILY Sm-like ribonucleoproteins 271 336 IPR010920 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0711 Lan-Chr9 10965387 10969476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0711 79 435 Mechanosensitive Ion Channel Family AT4G00290 68.067 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0711 K22047 - gmx:100814954 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0711 9 10965387 10969476 Lan2g0160 2 1356561 1361855 LSH