Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0658 ATGGATATAAAACCAGTACAGAGGAATGAACAACATTTTGGCCGGAAACCATGTTCTTATTGGTTAGCTGGGAGATGCAATAGAAATCCTTGCAGGTTTCTGCATAGTGTAACACCATCGTCGTCGTCATATTATACTCCTCAGTATAATAAACCCAAAAATGCTTATCGGTATACAAGGAACCCTCATTCTCATTACTCTGATGAGAAGACGACAACGAACCCCAAGTATAACTCAAAGGCAGTGACGGTTAGAGAGACCAACAAAACCGGAGATGAGAAGAGTGTTACAAAGAAGCCATCACAGACTCTGTGTAGATATTGGGTGAATGACAATTGTGTAAAAGGTGACAATTGCCAGAATTTGCATTCATGGTTTACCGGTGATGGCTTTTCAACATTAGCAAAGCTTAAAGAACACAAGAAGGTTGTCACTGGGATTACAATTCCAGTAGGATCGGACAAACTTTATTCTGGAAGCACTGATGGAATAGTTCGGACATGGGATTGCCATACTGGTCAATGTACTAATGTGAGAAATTGTGGTAGCGAAGTTAATTCTTTGATCAGTGAGGGTCCTTGGATTTTTGTAGGTTTAAACAATGTTGTCAAGGCTTGGAATATTCAAACTTCTATGGAGTTTACTCTTGATGGACCTAGAGGAAAAGTCCTTGCGATGGTTGTTGGCAATGATATACTTTTTGCTGCAGCGCAGGATGGTATTATTTCTGCATGGAGAGGCAGTTCTGATGCTAATTCTCCTTTCGAATTGGCTGCATCACTCAGTGGCCACACTAAAGCTATAGTGTGTCTGACGGTCGGTGGCAAGATGCTTTTCTCAGGATCCATGGACCATAGCATAAAGGTTTGGGACCTTGATACATTACAGTGCAAAATGACCCTTAATGGGCATACTGATATGGTAACATCCCTTATTTGTTGGGATAGTTTTTTGCTATCAAGTTCATCTGATTGCACGATTAAGATCTGGGTCGCCACTGAAGAGGGTACTATAAAAGTGGCATATACACACACCGAAGAAAATGGTATTCTTGCACTTAATGGGATGAGTGATGCAGAAGGGAAGCCTATTTTGTTTTCCTCCTCTGCAGATAATTCAGTTCGACTATATGAATTGCCATCATTTTTAGAAAGGGGTCGCTTATTTGCAAAACAAGTAGTTCGATCGATTGAGATAGGTCCCGAGGGCCTCTTCTTCACCGGAGATGGTACCGGCTTGCTGATGGTGTGGAGATGGTTGGAAGTGCCCAAGGTGGCATCGTCATGA 1287 0.4196 MDIKPVQRNEQHFGRKPCSYWLAGRCNRNPCRFLHSVTPSSSSYYTPQYNKPKNAYRYTRNPHSHYSDEKTTTNPKYNSKAVTVRETNKTGDEKSVTKKPSQTLCRYWVNDNCVKGDNCQNLHSWFTGDGFSTLAKLKEHKKVVTGITIPVGSDKLYSGSTDGIVRTWDCHTGQCTNVRNCGSEVNSLISEGPWIFVGLNNVVKAWNIQTSMEFTLDGPRGKVLAMVVGNDILFAAAQDGIISAWRGSSDANSPFELAASLSGHTKAIVCLTVGGKMLFSGSMDHSIKVWDLDTLQCKMTLNGHTDMVTSLICWDSFLLSSSSDCTIKIWVATEEGTIKVAYTHTEENGILALNGMSDAEGKPILFSSSADNSVRLYELPSFLERGRLFAKQVVRSIEIGPEGLFFTGDGTGLLMVWRWLEVPKVASS* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0658 428 ProSiteProfiles Zinc finger C3H1-type profile. 13 38 IPR000571 GO:0046872
Lan9g0658 428 PANTHER - 11 427 IPR044715 -
Lan9g0658 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 261 294 - -
Lan9g0658 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 330 IPR001680 GO:0005515
Lan9g0658 428 Gene3D - 228 425 IPR015943 GO:0005515
Lan9g0658 428 PRINTS G protein beta WD-40 repeat signature 156 170 IPR020472 -
Lan9g0658 428 PRINTS G protein beta WD-40 repeat signature 278 292 IPR020472 -
Lan9g0658 428 PRINTS G protein beta WD-40 repeat signature 318 332 IPR020472 -
Lan9g0658 428 Gene3D - 124 218 IPR015943 GO:0005515
Lan9g0658 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 137 169 - -
Lan9g0658 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 261 300 IPR001680 GO:0005515
Lan9g0658 428 SMART WD40_4 209 246 IPR001680 GO:0005515
Lan9g0658 428 SMART WD40_4 337 378 IPR001680 GO:0005515
Lan9g0658 428 SMART WD40_4 381 418 IPR001680 GO:0005515
Lan9g0658 428 SMART WD40_4 254 291 IPR001680 GO:0005515
Lan9g0658 428 SMART WD40_4 130 169 IPR001680 GO:0005515
Lan9g0658 428 SMART WD40_4 294 331 IPR001680 GO:0005515
Lan9g0658 428 ProSitePatterns Trp-Asp (WD) repeats signature. 278 292 IPR019775 -
Lan9g0658 428 Gene3D - 14 123 - -
Lan9g0658 428 SUPERFAMILY WD40 repeat-like 110 418 IPR036322 GO:0005515
Lan9g0658 428 ProSiteProfiles Zinc finger C3H1-type profile. 99 126 IPR000571 GO:0046872
Lan9g0658 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 137 178 IPR001680 GO:0005515
Lan9g0658 428 Pfam WD domain, G-beta repeat 296 330 IPR001680 GO:0005515
Lan9g0658 428 Pfam WD domain, G-beta repeat 259 291 IPR001680 GO:0005515
Lan9g0658 428 Pfam WD domain, G-beta repeat 133 169 IPR001680 GO:0005515
Lan9g0658 428 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 11 427 - -
Lan9g0658 428 SMART c3hfinal6 14 37 IPR000571 GO:0046872
Lan9g0658 428 SMART c3hfinal6 99 125 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0658 Lan-Chr9 9753855 9756627 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan9g0658 WD40 0.038 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0658 - - aprc:113849178 589.726