Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0652 ATGATTCAAATAACAAAACCCCATTTGAAGTTGCTTCACTTTCTTCACTTTCTGCTAGAACTTCACTGCATCAGTTCCTACCCTATAACACCAATGAAATGCACTGATACAACCCGAGTTCGTACTTCTTTCTTGGCCTATAAGCCTCAACAAAACCAAACTCTTTCTCTTATACAAAGCATGTTTGATGTGTTGCCAAGTGATATCACTTTTGAAGGCAATGATTGGAACTATATATTCATAAGGAAGAATTGTTCTTGTGCTAATGGTATTAAGAAATATGTGTCTAGCACTACTTTCACTGTTAAATCCAATGGAGGGTTAGTTTATGATTTGGTTATGGATTCCTATGATGGGCTTGCTTTCATTCCTAACACAACTAGGATGGCAAGAAATGGTGTTGTTGTGTCAGTGAGGTTGTTTTGTGGCTGCTCTAGTGGACTTTGGAACTATTTGATGAGTTATGTAATGAGAGATGGAGATAGTGTTGAATCGTTAGCGAGCCGGTTCGGGGTTAGTATGGATAGCATTGAGTCTGTAAATGGCATTGAAGATCCTGATAATGTCACTGTTGGTTCACTCTATTATATACCTCTCGATTCGGTTCCTGGAGATCCTTATCCCCTGAAGAACGCTACTATTCCAGCTCCGGTTCCTGCTCCATCTGTTGATGATTTTTCAGGTGATCAAGTCAATCATAAGGCTCATTTACCCTATGGATGGATCATCGGCGGTTTAGGCATTGGTCTTACTCTGATAATATTAAGCATATTTCTCTGTGTTTGTCTGAGATCTGAATCCAGAAGTCATGAAAAAGATGCTCAGGGAAAGGTCTCTCATAAATTCCATATTCTTCGGAATCCGAGTTTTTTCTGTGGTTCGGGAAGGTACATATGTGGCAAAGTTGTAGAGCAGAAGCAAACTGATGGTGAATCTAGCCATAACCAAGTCACCATTCCGAAAGTTTCAAGTCTAGGACCTGACGTATTTGACATGGATAAGCCTGTAGTTTTTGCATATGAAGATATATTTTCCTCAACTGATGGTTTCTCCGATTCAAATCTACTCGGCCATGGAACATATGGTTCTGTTTACTATAGTCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATGACAGCCACAAAAACAAAGGAATTTATGTCCGAGGTGAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGCTATGCGGCTAGTCATGATGAGCTTTTTCTTGTATATGAATATGCTCAGAAGGGTTCACTCAGAAGCCATTTGCATAATCCTCAAAATAAGGGCCATTCTCCACTGTCTTGGATCATGAGGGTACAGATTGTGCTTGATGCTGCTAGGGGCATCGAATACATACATGAGCACACCCGAACTCATTATGTCCACCGAGATATCAAGACAAGCAACATTTTGCTTGATGCTTCCTTTAGGGCTAAGATTTCAGATTTTGGGTTAGCAAAACTTGTTGGGATAACGAACGAGGGAGAAGTTTCGACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCTGAATACTTGAGTAATGGCCTTGCGACAACAAAAAGTGATGTCTTTGCATTCGGCGTTGTGCTTTTTGAGATTATTACGGGGAAGGAGGCCATTATTCGAACAAAAGGCACGGTGACAAAAAATCCCGAAAGACGTTCACTGGCGTCCGTAATGTTAGCAGTTCTCAGGAACCCACCTGATTCTATGAGTATGTCAAGCATGAAGGATTACATTGACACTAATATGATGAATCTCTATCCCCATGATTGTGTATTTAAGATGGCCATGTTGGCAAAGCAATGTGTGGACGATGATCCGATCTTACGACCCGATATGAAGCAAGTTGTGATTTCCCTGTCACAGATTCTTCTGTCTTCTGTTGAGTGGGAAGCAACTCTAGCTGGGAATAGCCAAGTATTCAGTGGGCTTGTTCAGGGAAGATAG 1983 0.4095 MIQITKPHLKLLHFLHFLLELHCISSYPITPMKCTDTTRVRTSFLAYKPQQNQTLSLIQSMFDVLPSDITFEGNDWNYIFIRKNCSCANGIKKYVSSTTFTVKSNGGLVYDLVMDSYDGLAFIPNTTRMARNGVVVSVRLFCGCSSGLWNYLMSYVMRDGDSVESLASRFGVSMDSIESVNGIEDPDNVTVGSLYYIPLDSVPGDPYPLKNATIPAPVPAPSVDDFSGDQVNHKAHLPYGWIIGGLGIGLTLIILSIFLCVCLRSESRSHEKDAQGKVSHKFHILRNPSFFCGSGRYICGKVVEQKQTDGESSHNQVTIPKVSSLGPDVFDMDKPVVFAYEDIFSSTDGFSDSNLLGHGTYGSVYYSLLRDQEVAIKRMTATKTKEFMSEVKVLCKVHHANLVELIGYAASHDELFLVYEYAQKGSLRSHLHNPQNKGHSPLSWIMRVQIVLDAARGIEYIHEHTRTHYVHRDIKTSNILLDASFRAKISDFGLAKLVGITNEGEVSTTKVVGTYGYLAPEYLSNGLATTKSDVFAFGVVLFEIITGKEAIIRTKGTVTKNPERRSLASVMLAVLRNPPDSMSMSSMKDYIDTNMMNLYPHDCVFKMAMLAKQCVDDDPILRPDMKQVVISLSQILLSSVEWEATLAGNSQVFSGLVQGR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0652 660 Pfam Protein tyrosine and serine/threonine kinase 354 630 IPR001245 GO:0004672|GO:0006468
Lan9g0652 660 ProSiteProfiles Protein kinase domain profile. 350 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g0652 660 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 32 660 IPR044812 GO:0019199|GO:0045087
Lan9g0652 660 SUPERFAMILY LysM domain 153 198 IPR036779 -
Lan9g0652 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Lan9g0652 660 PANTHER BNAA06G02020D PROTEIN 32 660 - -
Lan9g0652 660 Gene3D Transferase(Phosphotransferase) domain 1 423 647 - -
Lan9g0652 660 SMART LysM_2 154 198 IPR018392 -
Lan9g0652 660 Gene3D LysM domain 150 203 IPR036779 -
Lan9g0652 660 SMART serkin_6 350 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g0652 660 ProSiteProfiles LysM domain profile. 153 197 IPR018392 -
Lan9g0652 660 CDD LysM 154 197 IPR018392 -
Lan9g0652 660 SUPERFAMILY Protein kinase-like (PK-like) 327 632 IPR011009 -
Lan9g0652 660 Pfam LysM domain 155 192 IPR018392 -
Lan9g0652 660 Gene3D Phosphorylase Kinase; domain 1 326 421 - -
Lan9g0652 660 ProSitePatterns Protein kinases ATP-binding region signature. 356 377 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0652 Lan-Chr9 9631081 9638784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0652 31 660 Receptor kinase-like Gene Family AT1G51940 68.545 0.0 849
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Lan9g0652 PK_Tyr_Ser-Thr 2.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0652 - - gmx:100796989 1093.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0652 9 9631081 9638784 Lan9g0652 9 9631081 9638784 ECH
Lan3g0207 3 1327007 1331536 Lan9g0652 9 9631081 9638784 PCT
Lan9g0652 9 9631081 9638784 Lan3g0207 3 1327007 1331536 PCT