Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0620 ATGAACAATTGGTTGGGGTTTTCTCTCACTCCACACTTGAGGATTGATGAAGATTTTGGGAGAGAAAACCAAGACCATGGAGAAGGAAGAGAACCCTATCCTCATCACTTGTCTGTTATGCCTTTGCAATCTGATGGTTCTCTTTGTGTTGCTGATTCTTTCAGACACTCAGCTCCACATGAAGAATGGAGATATGATAATGGAGGAAATTCAAGTGAAGAAGGTCCAAAACTTGAAGACTTCTTAGGATGCTATTCAAACTCATCATCTCTTGCTGAAACCAAAGTCTTTTGCCAACAAGATATTACAACACATCATAACCAAAACCAAAATAACAACAACATTTCCAAGATTAATAATGTCAATATTGCTGAGGAAAATAATCTAACAAACCAATCTTCTATGATCCAAAATTTCCATGCATATAATGATAACCCACATGGCTTAATCCATAGTAATGGCATGTATAAGTCTTGGTTGGCACAAACTCATTTTTCTGATGCAGCAAAAGCTTCTTCAGCTGAGGCAAATGGGTGTAACTTTCAATCACTGAATTTGACTATGAGTCCCATTGTGCAAAATAGTGTTGGTGCAATTTCACCTTTGCAAGTGGATGATGATAGTAGAAAACGTTCCATACTGAAAATTCAAGGTAGGGAACCTGTGCCTCGCAAATCTATTGATACTTTTGGGCAGAGAACTTCTCAATACCGTGGTGTTACAAGGCATAGATGGACTGGTAGATATGAGGCCCATTTGTGGGACAATAGCTGCAGGAAGGAAGGGCAAACAAGGAAAGGAAGACAAGTTTACCTTGGTGGTTATGACAAGGAAGAAAAAGCAGCAAGGGCTTATGACTTGGCTGCACTCAAGTATTGGGGTGCAACAACTCACATAAATTTCCCTTTAAGCACTTATGAGAAGGAACTTGAAGAGATGAAGAATATGACTAGACAAGAATTTGTAGCCAATTTAAGAAGGAAGAGTAGTGGATTTTCAAGAGGGGCTTCTGTCTATAGAGGAGTGACAAGACACCATCAACATGGAAGGTGGCAGGCTCGGATAGGAAGGGTTGCCGGAAACAAGGACTTGTATCTTGGTACATTCAGTACACAAGAAGAAGCTGCTGAAGCATATGATATAGCAGCAATCAAGTTCAGAGGAACAAGTGCTGTGACAAACTTTGACATTAGTAGGTATGATGTGAAGAGAATTTGCTCAAGCTCAACGCTCATTGCTGGCAACCTTGCAAAACGGTCCCCTAAAGACACAGCTCCTGCTGCGGCTGCTGTCACCGAGGACTTCAATCCATGTGGTTCGTCGACACCTTCGCAGCCAACTCCTTTGGCTATAACCGATTGCGAACACATCGACAAATTTTCAAATGCGGTGTGGACTTCCAACAGTGATGAGCAAGTAGTCAATGAGAGTGAAAACGCGAACAATGTCTCTGAATCATCAAAACAGGTTTCACCAAGCAACAAGAATGTGTTGAACCCTCAAAGCCCCAAGTGTTCTGTGGGACTACCCAATGAGTTTGGTGTGAGTGGAGCAGATTATGGACATGGGTACTTCACCCTATCAGGGCCAAAATATGACGACGATGATAGAAACGATGACAATGGTGGCCGCACGGACAACAACCGTCTTGGAAATTTGGGTTTGGTTAATCAAGTTCCAATGTTTGCCTTGTGGAATGAATGA 1704 0.419 MNNWLGFSLTPHLRIDEDFGRENQDHGEGREPYPHHLSVMPLQSDGSLCVADSFRHSAPHEEWRYDNGGNSSEEGPKLEDFLGCYSNSSSLAETKVFCQQDITTHHNQNQNNNNISKINNVNIAEENNLTNQSSMIQNFHAYNDNPHGLIHSNGMYKSWLAQTHFSDAAKASSAEANGCNFQSLNLTMSPIVQNSVGAISPLQVDDDSRKRSILKIQGREPVPRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCRKEGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGATTHINFPLSTYEKELEEMKNMTRQEFVANLRRKSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGTSAVTNFDISRYDVKRICSSSTLIAGNLAKRSPKDTAPAAAAVTEDFNPCGSSTPSQPTPLAITDCEHIDKFSNAVWTSNSDEQVVNESENANNVSESSKQVSPSNKNVLNPQSPKCSVGLPNEFGVSGADYGHGYFTLSGPKYDDDDRNDDNGGRTDNNRLGNLGLVNQVPMFALWNE* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0620 567 Gene3D AP2/ERF domain 338 398 IPR036955 GO:0003700|GO:0006355
Lan9g0620 567 Gene3D AP2/ERF domain 235 304 IPR036955 GO:0003700|GO:0006355
Lan9g0620 567 SUPERFAMILY DNA-binding domain 235 304 IPR016177 GO:0003677
Lan9g0620 567 ProSiteProfiles AP2/ERF domain profile. 338 396 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 MobiDBLite consensus disorder prediction 468 503 - -
Lan9g0620 567 CDD AP2 337 398 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 Pfam AP2 domain 236 294 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 Pfam AP2 domain 337 388 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 ProSiteProfiles AP2/ERF domain profile. 236 302 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 CDD AP2 235 304 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 SUPERFAMILY DNA-binding domain 337 398 IPR016177 GO:0003677
Lan9g0620 567 PRINTS Ethylene responsive element binding protein signature 237 248 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 PRINTS Ethylene responsive element binding protein signature 378 398 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 SMART rav1_2 338 402 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 SMART rav1_2 236 308 IPR001471 GO:0003700|GO:0006355
Lan9g0620 567 MobiDBLite consensus disorder prediction 529 551 - -
Lan9g0620 567 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR BBM 39 485 - -
Lan9g0620 567 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 39 485 - -
Lan9g0620 567 MobiDBLite consensus disorder prediction 529 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0620 Lan-Chr9 8966769 8970836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0620 1 421 AP2-EREBP Transcription Factor Family AT1G72570 53.509 1.52e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Lan9g0620 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0620 K09285 - gmx:100805489 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0620 9 8966769 8970836 Lan9g0620 9 8966769 8970836 ECH
Lan9g0620 9 8966769 8970836 Lan2g0479 2 5500082 5503847 LSH
Lan6g1843 6 29651453 29654548 Lan9g0620 9 8966769 8970836 PCT
Lan9g0620 9 8966769 8970836 Lan6g1843 6 29651453 29654548 PCT