Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0610 ATGGAGGAATCAGGAGAAAATTGGCCTTCTTATTCTGATTTGGATGTGGGTGACTATGTAAATGATTTGTGTTTTGATGATGAAGAAATAGAGAGTGATGAAACCATAGATCCAATGATATTGTTGGGTGAAACCAAGAAAAAGAGAAGAGAAAGAAAACTCAATGAGAAGTTGCTTGCACTTTCAGCTACTATCCCTGGCTTGAAAAAGAAGATGGACAATACTTCAATCCTAGACAAAGCTAGCAACTATGTGAAAGAACTTCAAGAACATGTAAGAGAGCTAGAACAAGAAGTTGGATCCCAAAGTTGTAAGAACAATGAAACCTCTTCATGCATTGAAGTGAATTCTGATTATTATGGTGAACCAAATAATCATGATAATATTATTCTTCCTGAAGTGAGAGTAAGAGTGTTACATAAAGAAGTGCTTATCATAATCCATTGTGAGAAACAAAAGAGCATTATGCTTCAAATATTGTCACATCTTGAAAATCTTCATCTCTCAATGGTCCATAACAGTGTCTTGCCTTTTGGGAAATCTACTCTTGAAATTACCATTATTGCTCAGATGGGTGATGAATACAATATGACAACAGATGAACTGGTGAAAAGTCTGAGATTATTGATCATGACACAGTAG 642 0.3505 MEESGENWPSYSDLDVGDYVNDLCFDDEEIESDETIDPMILLGETKKKRRERKLNEKLLALSATIPGLKKKMDNTSILDKASNYVKELQEHVRELEQEVGSQSCKNNETSSCIEVNSDYYGEPNNHDNIILPEVRVRVLHKEVLIIIHCEKQKSIMLQILSHLENLHLSMVHNSVLPFGKSTLEITIIAQMGDEYNMTTDELVKSLRLLIMTQ* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0610 213 Pfam Helix-loop-helix DNA-binding domain 48 89 IPR011598 GO:0046983
Lan9g0610 213 Coils Coil 78 105 - -
Lan9g0610 213 PANTHER BHLH TRANSCRIPTION FACTOR 46 212 - -
Lan9g0610 213 PANTHER PROTEIN, PUTATIVE-RELATED 46 212 - -
Lan9g0610 213 Gene3D - 44 111 IPR036638 GO:0046983
Lan9g0610 213 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 106 IPR036638 GO:0046983
Lan9g0610 213 SMART finulus 48 94 IPR011598 GO:0046983
Lan9g0610 213 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 38 88 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0610 Lan-Chr9 8787589 8791919 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0610 48 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 34.783 3.82e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan9g0610 HLH 1.2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0610 - - aip:107616596 229.95