Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0603 ATGGAAGATCAAAAACACTCACATGATTCAACTCCTCATCTTGTTCTTGATCTAAGTCTCTCTAGCAAGGATTCAAGTGATGAATCAAAGCCAGAACTCAACCTTTTCAACTCTTTCCATACAAATTTATCTGAAAACCACTCAGAAGTTAGTCATTATAATGAAATTGAGCCAAGGACTTTTTCATGCAACTATTGCCAAAGAAAGTTCTATAGTTCACAAGCACTCGGAGGACACCAAAATGCGCATAAGCGCGAAAGAACTATGGTAAGAAGAGGATATAAAACTGATGCTGCTGCAATTTCAGTAGATTTTGGACATGGGTATTCTAGCATGGCTTATCAACCTTCACATGGCTTGTATAACAAGTCACTTGGAATTCAGGTTCATTCTATGATCCACAAGCCTTATAATCAAATACCCTTTTTCGGGTGGAAGAGACAGATTTTGGATTCACAGCCAGCAATTGTGGAGTTTACATCTGGAAAATTTCATGTTGGAGCAGAAACTGGTTCATCTTTGGTTGGTGGCATTCCAAGGCTAGGAAAGTTTTCTAATAGTGTAGTGACTGAGGGATTTGGAGGTTTGTTTGGCAGCACTAGCCATTTAAAGTCTAAACAAAACAAGTTGCAGCAAAACCTTGACTTATCCCTTAAGCTCTAA 663 0.3861 MEDQKHSHDSTPHLVLDLSLSSKDSSDESKPELNLFNSFHTNLSENHSEVSHYNEIEPRTFSCNYCQRKFYSSQALGGHQNAHKRERTMVRRGYKTDAAAISVDFGHGYSSMAYQPSHGLYNKSLGIQVHSMIHKPYNQIPFFGWKRQILDSQPAIVEFTSGKFHVGAETGSSLVGGIPRLGKFSNSVVTEGFGGLFGSTSHLKSKQNKLQQNLDLSLKL* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0603 220 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Lan9g0603 220 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 220 - -
Lan9g0603 220 SUPERFAMILY beta-beta-alpha zinc fingers 58 89 IPR036236 -
Lan9g0603 220 Gene3D Classic Zinc Finger 37 105 - -
Lan9g0603 220 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 2 220 IPR044246 GO:0009788
Lan9g0603 220 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 88 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0603 Lan-Chr9 8737858 8739031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0603 2 220 C2H2 Transcription Factor Family AT5G10970 40.254 1.93e-37 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan9g0603 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0603 - - gmx:100816861 272.707
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0603 9 8737858 8739031 Lan9g0603 9 8737858 8739031 ECH
Lan5g0510 5 10540841 10542016 Lan9g0603 9 8737858 8739031 LSH