Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan9g0603 | ATGGAAGATCAAAAACACTCACATGATTCAACTCCTCATCTTGTTCTTGATCTAAGTCTCTCTAGCAAGGATTCAAGTGATGAATCAAAGCCAGAACTCAACCTTTTCAACTCTTTCCATACAAATTTATCTGAAAACCACTCAGAAGTTAGTCATTATAATGAAATTGAGCCAAGGACTTTTTCATGCAACTATTGCCAAAGAAAGTTCTATAGTTCACAAGCACTCGGAGGACACCAAAATGCGCATAAGCGCGAAAGAACTATGGTAAGAAGAGGATATAAAACTGATGCTGCTGCAATTTCAGTAGATTTTGGACATGGGTATTCTAGCATGGCTTATCAACCTTCACATGGCTTGTATAACAAGTCACTTGGAATTCAGGTTCATTCTATGATCCACAAGCCTTATAATCAAATACCCTTTTTCGGGTGGAAGAGACAGATTTTGGATTCACAGCCAGCAATTGTGGAGTTTACATCTGGAAAATTTCATGTTGGAGCAGAAACTGGTTCATCTTTGGTTGGTGGCATTCCAAGGCTAGGAAAGTTTTCTAATAGTGTAGTGACTGAGGGATTTGGAGGTTTGTTTGGCAGCACTAGCCATTTAAAGTCTAAACAAAACAAGTTGCAGCAAAACCTTGACTTATCCCTTAAGCTCTAA | 663 | 0.3861 | MEDQKHSHDSTPHLVLDLSLSSKDSSDESKPELNLFNSFHTNLSENHSEVSHYNEIEPRTFSCNYCQRKFYSSQALGGHQNAHKRERTMVRRGYKTDAAAISVDFGHGYSSMAYQPSHGLYNKSLGIQVHSMIHKPYNQIPFFGWKRQILDSQPAIVEFTSGKFHVGAETGSSLVGGIPRLGKFSNSVVTEGFGGLFGSTSHLKSKQNKLQQNLDLSLKL* | 221 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan9g0603 | 220 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 63 | 83 | IPR013087 | - | |
Lan9g0603 | 220 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 2 | 220 | - | - | |
Lan9g0603 | 220 | SUPERFAMILY | beta-beta-alpha zinc fingers | 58 | 89 | IPR036236 | - | |
Lan9g0603 | 220 | Gene3D | Classic Zinc Finger | 37 | 105 | - | - | |
Lan9g0603 | 220 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 2 | 220 | IPR044246 | GO:0009788 | |
Lan9g0603 | 220 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 61 | 88 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan9g0603 | Lan-Chr9 | 8737858 | 8739031 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan9g0603 | 2 | 220 | C2H2 Transcription Factor Family | AT5G10970 | 40.254 | 1.93e-37 | 130 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lan9g0603 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan9g0603 | - | - | gmx:100816861 | 272.707 |