Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0601 ATGCAAGACAATGAGGAAATCCCATCAGTGCCTTCAACACCAGCCACACCAGGAACTCCTGGTGCTCCTCTTTTTGGTGGGTTTAGGTCTGAGAGAAATCATATTAATGGTATTTCTAGGAAGTCACTCCTCAATAGTTGTAAATGTTTTAGTAGTGTTCAAGATTGGACCTTAGAAGATGGTGCATTACCTAAAGTCTCTTGCTCTTTGATTCCCCCTCCTATTCCTCTTGCAAGAAAGGTAGGAGCTGAGTTTATAGGAACATTCATACTCATGTTTGCTGGAACAGCAGCAGCTATAGTGAACCAAAAAACAAATGGGTCAGAGAGTTTAATTGGATGTGCTGCAACTACTGGTCTTGCTGTTATGGTCATAATCCTCTCCACTGGACACATCTCTGGTGCTCATCTCAACCCTGCTGTTACCATTTCCTTTGCTGCATTGAACCACTTCCCTTGGAAAAATGTGCCTACGTATATTGGTGCACAAGTTTTGGCATCTATATGTGCATCATTTGCACTCAAATGGATATATCATCCCTTCATGAATGGTGGAGTTACAGTTTCTACAGTTGGAAATGGCCAAGCTTTTGCATTAGAGTTCATTATCAGCTTTAATCTCATGTTCGTTGTTACTGCAGTTGCCACCGACACTAGAGCCGTTGGAGAGCTTGCGGGAATCGCGGTGGGGGCCACTGTGATGCTCAATATACTCATTGCTGGGCCATCAACAGGGGGTTCAATGAACCCAGTAAGGACACTTGGCCCAGCAATTGCCACAAACAACTATAAAGCCATATGGGTTTATCTCATTGCTCCTATTCTTGGTGCTCTTGGTGGTGCTGCTGCATATACTGCAGTCAAACTTCCAGATGAAGATCAAAACATTCATGCAAAAGTCCCTTCAAATCCTGGGAGCTTTAGAAGGTGA 930 0.4366 MQDNEEIPSVPSTPATPGTPGAPLFGGFRSERNHINGISRKSLLNSCKCFSSVQDWTLEDGALPKVSCSLIPPPIPLARKVGAEFIGTFILMFAGTAAAIVNQKTNGSESLIGCAATTGLAVMVIILSTGHISGAHLNPAVTISFAALNHFPWKNVPTYIGAQVLASICASFALKWIYHPFMNGGVTVSTVGNGQAFALEFIISFNLMFVVTAVATDTRAVGELAGIAVGATVMLNILIAGPSTGGSMNPVRTLGPAIATNNYKAIWVYLIAPILGALGGAAAYTAVKLPDEDQNIHAKVPSNPGSFRR* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0601 309 PRINTS Major intrinsic protein family signature 79 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0601 309 PRINTS Major intrinsic protein family signature 118 142 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0601 309 PRINTS Major intrinsic protein family signature 155 174 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0601 309 PRINTS Major intrinsic protein family signature 199 217 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0601 309 PRINTS Major intrinsic protein family signature 230 252 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0601 309 PRINTS Major intrinsic protein family signature 267 287 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0601 309 ProSitePatterns MIP family signature. 136 144 IPR022357 -
Lan9g0601 309 MobiDBLite consensus disorder prediction 1 26 - -
Lan9g0601 309 CDD MIP 79 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0601 309 PANTHER AQUAPORIN NIP2-1 4 297 IPR034294 -
Lan9g0601 309 Pfam Major intrinsic protein 78 284 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0601 309 Gene3D Glycerol uptake facilitator protein. 74 298 IPR023271 -
Lan9g0601 309 SUPERFAMILY Aquaporin-like 76 296 IPR023271 -
Lan9g0601 309 PANTHER BNAA02G36290D PROTEIN 4 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0601 Lan-Chr9 8722879 8728651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0601 2 309 Major Intrinsic Protein MIP AT1G80760 74.839 1.63e-163 455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0601 K09874 - gmx:100815637 434.491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0508 5 10522234 10526189 Lan9g0601 9 8722879 8728651 LSH