Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0594 ATGTTTGACAATGGTTATAAGTCACAATATATTGGTGGCCAAATGGAGAAATTTGTAAGGTTGGATGAACTGGATGATTTGTCATTGCCATCTAGCTCAACCGGAATGAAGAAATTAAGATTTAACTTAGATTGTCTTCCTTTTCGTCGTCGCGGTAAAAAGACTCCATCGAAATCGTTTAGGCAAGGAGTGAAGAGAGGATCAGATGGACTTGTAACACTCGGAAGATCGCTCAGAAGTGGAGTCACTTGGTCAGTGTTCCCCGAAGATCTTAGAGTATCGGAGAAAAAAGTATTTGATCCTCAAGATAAGAACCTTCTGTATTGGAACAAGTTTTTCGAGCTTCTTTGCATATTTTCAGTAGCTTGTGATCCTTTCTTGTTTTATCTTCCTTATTTCAACCACAAATCATTTTGCCTCGCCATAGATAACAAGCTAGCGAGTTTCGCTGTTACGCTGCGAACAATATTCGATTGTATTTATCTCATCCGCATAAGTTTTCAGTTCCGCACTGCTTATATAGCACCTTCATCTCGTGTATTCGGAAGAGGTGAACTTGTCATAGATCCTGCACAGATTGCCAAGCGATACTTACAACGTTACTTCATTGTCGACTTCATTTCTGTGCTGCCTATGCCACAGATTATAGTGTGGAAGTATCTCTACAAAACAAGACGAGCAGAGGTTTTAGCCACAAAAACAGCACTGTTAAGAATTGTCATCCTGCAATATTTTCCGAGATTTCTACGATTTCTACCCTTAGCTTCAGAAGTTAAAAAGACAGCTGGTGTTTTTTCCGAAAATGCACTTCTTGGTGCCATGTACTATTTGATTTGGTATATGCTTGCTAGTCATATAACAGGTTCTGTGTGGTACTTACTAGCCATAGAACGCAATGATACTTGTTGGAAGGAAGCTTGTAAAGAAGTTCGAAATTGTTATGTACATTTCTTGTACTGTGGGAGTTCTAATAAGCATATTCCAGGGTATGAAAGTTGGCGAAATATCAGCCAAACTGTTCTTAGAAGTCGCTGCTCCGGCGAGGAAGACTCGCAATTTAATTATGGAATCTTCACTCAAGCTATACAATCTGGTATTGTTGCTTCCATAGAAGTGTTTCCTAAATTCTGTTACTGCTTATGGTGGGGCCTTCAAAACTTGAGTACACTTGGACAGGGGCTTCTAACTAGTACTTACCCTGGAGAGGTTTTGTTTTCCATTGTAATAGCTATTATGGGGCTAGTCCTTTTTTCTCTTCTCATTGGAAACATGCAGACATACCTTCAATCAATGTCAGTTCGTCTCGAGGAAATGAGGATCAAAAGACGCGACTCTGAGCAGTGGATGCATCATCGTTTACTTCCTCCGGAGCTAAGGGAAAGAGTCAGAAAGTATGACCAATACAAGTGGCTGAACACAAGAGGAGTAGATGAAGAGAATTTGGTTCAGAGTCTTCCAAAAGATCTCAGAAGAGATATTAAACGACATCTTTGCTTGAATTTGGTTAGAAGGGTGCCTCTCTTTGCTAACATGGAAGAACGCTTGCTTGACGCTATATGCGAGAGATTGAAGCCTAGTTTGTATACCGAAAGCACTTACATAGTTAGGGAAGGAGATCCAGTTAATGAGATGCTCTTCATCATTCGCGGTCGTCTCGAAAGTGTAACTACAGATGGTGGAAGAAGTGGTTTTTTCAACCGAGGTCTTCTAAAAGAAGCCGACTTCTGCGGTGAAGAGCTACTAACATGGGCACTGGATCCGAAATCCGCAGCTAACTTGCCATCATCTACAAGGACAGTGAAGGCTATAAATGAAGTAGAGGCATTTGCATTGGAAGCAGAAGAGTTGAAGTTTGTTGCTTCACAGTTCAGGCACATTCATAGTAGACAAGTTCAGCACACGTTCCGTTTCTACTCGCAGCAGTGGAGAACATGGGCTGCAATCTTCATTCAAGCTGCATGGAGGAGACATATGAGGAGGAAAGTCGCGGAACAGCGCAGGAAGGAGGAGGAAGAAGACTTCTATGACTCAGATGATGGTGGTAATGATTCTGCAAGAGCCTTGGTTCCACATAGTGAAGGTTCATCATCAAAGAGGTTTGGACTTGGTTCAACTATCTATGCTTCGCGCTTTGCTGCTAATCTTCAAGGTCGTAGACTTCGTGGTTCGAGTTCTATGGACTTGGCGAAAATCCAGAAGCCCTCAGAACCTGACTTTAGTGCTCTTGGTGATGAAGAATGA 2241 0.4181 MFDNGYKSQYIGGQMEKFVRLDELDDLSLPSSSTGMKKLRFNLDCLPFRRRGKKTPSKSFRQGVKRGSDGLVTLGRSLRSGVTWSVFPEDLRVSEKKVFDPQDKNLLYWNKFFELLCIFSVACDPFLFYLPYFNHKSFCLAIDNKLASFAVTLRTIFDCIYLIRISFQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLQRYFIVDFISVLPMPQIIVWKYLYKTRRAEVLATKTALLRIVILQYFPRFLRFLPLASEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLAIERNDTCWKEACKEVRNCYVHFLYCGSSNKHIPGYESWRNISQTVLRSRCSGEEDSQFNYGIFTQAIQSGIVASIEVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVLFSIVIAIMGLVLFSLLIGNMQTYLQSMSVRLEEMRIKRRDSEQWMHHRLLPPELRERVRKYDQYKWLNTRGVDEENLVQSLPKDLRRDIKRHLCLNLVRRVPLFANMEERLLDAICERLKPSLYTESTYIVREGDPVNEMLFIIRGRLESVTTDGGRSGFFNRGLLKEADFCGEELLTWALDPKSAANLPSSTRTVKAINEVEAFALEAEELKFVASQFRHIHSRQVQHTFRFYSQQWRTWAAIFIQAAWRRHMRRKVAEQRRKEEEEDFYDSDDGGNDSARALVPHSEGSSSKRFGLGSTIYASRFAANLQGRRLRGSSSMDLAKIQKPSEPDFSALGDEE* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0594 746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 8-RELATED 12 742 - -
Lan9g0594 746 Gene3D Jelly Rolls 505 625 IPR014710 -
Lan9g0594 746 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 742 - -
Lan9g0594 746 SUPERFAMILY Voltage-gated potassium channels 101 429 - -
Lan9g0594 746 Gene3D - 112 432 - -
Lan9g0594 746 CDD CAP_ED 507 638 IPR000595 -
Lan9g0594 746 Gene3D Helix hairpin bin 434 498 - -
Lan9g0594 746 MobiDBLite consensus disorder prediction 723 746 - -
Lan9g0594 746 SMART cnmp_10 507 638 IPR000595 -
Lan9g0594 746 MobiDBLite consensus disorder prediction 665 698 - -
Lan9g0594 746 ProSiteProfiles IQ motif profile. 643 672 IPR000048 GO:0005515
Lan9g0594 746 SUPERFAMILY cAMP-binding domain-like 437 627 IPR018490 -
Lan9g0594 746 ProSiteProfiles cAMP/cGMP binding motif profile. 507 590 IPR000595 -
Lan9g0594 746 Pfam Ion transport protein 108 434 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0594 Lan-Chr9 8668829 8674842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0594 6 741 Ion Channels AT1G15990 69.262 0.0 1010
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0594 K05391 - gmx:100810453 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0497 5 10389214 10394404 Lan9g0594 9 8668829 8674842 LSH