LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan9g0572	ATGAGGCCCATTCATCCTCCACCCTCCTCCTCCGCCCTTGCTGGTGGTGCTAACCGTTCTCACCACCGGCGTCGCCAGGACCTCACCATACCCCTCCCTCAGCGTGACACAGCCCTCGCTGTCCCCCTCCCTCTCCCGCCCACCTCCGCCCCCACCACCCACCAGCTCATCCCCTTCTCCGAGCTGGAGCGTCTCAACCGAATCGGAAGCGGGAGCGGCGGCACCGTCTATAAGGTCATCCACCGTCCCACCAAACGGCTGTACGCTCTGAAGGTCATCTACGGGCACCATGAGGAGGCCGTACGGCGCCAGATCCACCGTGAGATCCAGATCCTCCGTGATGTGGACGATCAGAACGTGGTGAGGTGCCATGACATGTACGATCACAACGCTGAGATTCAAGTCCTTCTTGAATTCATGGATGGAGGTTCACTCGAAGGGAAGCATATCCATAACGAGCAGAACCTCGCTGATCTCTGTCGTCAGATACTGAGTGGACTCGCTTATCTCCACCGGCGCCACATCGTCCACCGTGACATCAAGCCATCCAACCTCCTGATCAATTCAAGGAAGCAGGTGAAGATCGCTGACTTCGGCGTTGGTCGGATCTTGAACCAAACCATGGATCCATGCAATTCAGCAGTTGGAACAATCGCTTACATGAGTCCTGAGAGGATCAACACTGACATCAATGATGGACAATATGATGCATATGCTGGTGATATATGGAGCCTTGGAGTTTCAATATTGGAGTTTTATATGGGAAGGTTTCCATTTGCAGTTGGGAGACAAGGGGATTGGGCTAGCTTGATGTGTGCTATCTGTATGGCTCCACCTCCTGAGGCACCCGTCACTGCTTCACCGGAGTTTCGCGATTTCGTATCCAGGTGTTTGCAGAGGGAACCTTCTAAAAGGTGGACTGCATCAAGGTTGTTGGGACATCCTTTTATTGCTCAGGGAATTCTCAATCATGCTCAGATTCATAACAACAACCTTCATCACCTGCTACCTCCAACCAGGCCCCTTTCTTTTTAA	1035	0.5324	MRPIHPPPSSSALAGGANRSHHRRRQDLTIPLPQRDTALAVPLPLPPTSAPTTHQLIPFSELERLNRIGSGSGGTVYKVIHRPTKRLYALKVIYGHHEEAVRRQIHREIQILRDVDDQNVVRCHDMYDHNAEIQVLLEFMDGGSLEGKHIHNEQNLADLCRQILSGLAYLHRRHIVHRDIKPSNLLINSRKQVKIADFGVGRILNQTMDPCNSAVGTIAYMSPERINTDINDGQYDAYAGDIWSLGVSILEFYMGRFPFAVGRQGDWASLMCAICMAPPPEAPVTASPEFRDFVSRCLQREPSKRWTASRLLGHPFIAQGILNHAQIHNNNLHHLLPPTRPLSF*	345

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan9g0572	344	SMART	serkin_6	62	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan9g0572	344	ProSiteProfiles	Protein kinase domain profile.	62	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan9g0572	344	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	175	187	IPR008271	GO:0004672\|GO:0006468
	Lan9g0572	344	Pfam	Protein kinase domain	63	317	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan9g0572	344	CDD	PKc_MAPKK_plant_like	60	317	-	-
	Lan9g0572	344	SUPERFAMILY	Protein kinase-like (PK-like)	59	328	IPR011009	-
	Lan9g0572	344	Gene3D	Transferase(Phosphotransferase) domain 1	142	333	-	-
	Lan9g0572	344	ProSitePatterns	Protein kinases ATP-binding region signature.	68	91	IPR017441	GO:0005524
	Lan9g0572	344	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lan9g0572	344	PANTHER	MITOGEN-ACTIVATED KINASE KINASE KINASE	20	325	-	-
	Lan9g0572	344	PANTHER	MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4	20	325	-	-
	Lan9g0572	344	Gene3D	Phosphorylase Kinase; domain 1	48	141	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan9g0572	Lan-Chr9	8390250	8391374	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan9g0572	1	317	MAP Kinase Kinase Gene Family	AT1G51660	70.710	3.60e-167	468

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE7	Lan9g0572		Pkinase	8.6e-64	CL0016