Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0551 ATGGCCGCTTCTGTTGCTCTCAGAAAGTCTTACACTTCTAAAAGACTCCTCCTTTTCTATTCTTCTTCTTATTCTAAATATGTCTCTTCTTCCAATCCCAATTCCATTACTTCCTGGTTGACCAGATCCATGGCCACTTTCACCAGAACAAAACCTCATGTTAATGTTGGAACTATTGGACATGTTGATCATGGGAAGACTACCCTCACTGCTGCTATTACCAAAGTGCTAGCAGATGAAGGAAAAGCTAAAGCTATAGCCTTTGATGAAATTGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACTATTGCTACAGCCCATGTTGAATATGAGACTGTCAAACGACACTATGCACATGTTGATTGCCCTGGACATGCTGATTATGTTAAAAATATGATTACAGGAGCTGCCCAAATGGATGGAGGTATACTCGTTGTATCTGCACCTGATGGACCCATGCCTCAAACAAAGGAACACATTCTTCTTGCTCGTCAAGTTGGTGTGCCATCTCTTGTCTGCTTTTTGAATAAAGTTGATGCTGTCGATGATCCAGAGTTATTAGAGCTTGTAGAAATGGAGCTCCGTGAGCTTCTCAGCTTCTACAAGTTCCCTGGAGATGAAATCCCAATCATTAGGGGTTCAGCATTGTCCGCTTTACAGGGTACCAATGAAGAGATTGGAAAAAAAGCCATTCTTAAATTAATGGATGCTGTAGATGAATATATTCCGGACCCTGTTCGCCAGCTTGACAAACCTTTCCTAATGCCAATCGAAGATGTATTCTCAATTCAGGGACGAGGGACAGTGGCCACTGGCCGTGTCGAACAAGGGATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTAATGCAGGGTGGTCCTCTCAAAACAACAGTAACCGGAGTTGAGATGTTCAAGAAAATTTTAGATCAAGGACAGGCTGGTGACAATGTTGGTCTTCTTCTTCGTGGTCTTAAGCGTGAGGACATTCAACGTGGACAGGTCATTGCCAAGCCCGGTTCTGTAAAAACATCCAAGAAATTTGAAGCAGAGATATATGTACTCACGAAGGATGAGGGTGGGCGGCACACTGCTTTCTTCTCTAACTATAAACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAATTGCCTGAAAATGTTAAGATGGTTATGCCTGGAGATAACGTTACTGCAGTGTTTGAATTGATTTCACCTGTTCCACTTGAAGCAGGACAAAGATTTGCCTTGAGAGAAGGAGGAAGAACAGTTGGTGCAGGTGTGGTGTCAAAAGTACTGAGCTAA 1320 0.4273 MAASVALRKSYTSKRLLLFYSSSYSKYVSSSNPNSITSWLTRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAIAFDEIDKAPEEKKRGITIATAHVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEEIGKKAILKLMDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYKPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELISPVPLEAGQRFALREGGRTVGAGVVSKVLS* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0551 439 CDD EFTU_III 345 434 - -
Lan9g0551 439 Gene3D Translation factors 383 438 - -
Lan9g0551 439 CDD EF_Tu 52 246 IPR041709 -
Lan9g0551 439 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 348 438 IPR009001 -
Lan9g0551 439 PANTHER ELONGATION FACTOR TU-RELATED 27 438 - -
Lan9g0551 439 CDD EFTU_II 254 342 IPR033720 -
Lan9g0551 439 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 92 107 IPR031157 -
Lan9g0551 439 SUPERFAMILY Translation proteins 248 344 IPR009000 -
Lan9g0551 439 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 51 247 IPR000795 GO:0003924|GO:0005525
Lan9g0551 439 PRINTS GTP-binding elongation factor signature 55 68 IPR000795 GO:0003924|GO:0005525
Lan9g0551 439 PRINTS GTP-binding elongation factor signature 99 107 IPR000795 GO:0003924|GO:0005525
Lan9g0551 439 PRINTS GTP-binding elongation factor signature 119 129 IPR000795 GO:0003924|GO:0005525
Lan9g0551 439 PRINTS GTP-binding elongation factor signature 135 146 IPR000795 GO:0003924|GO:0005525
Lan9g0551 439 PRINTS GTP-binding elongation factor signature 172 181 IPR000795 GO:0003924|GO:0005525
Lan9g0551 439 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 49 269 IPR027417 -
Lan9g0551 439 TIGRFAM small_GTP: small GTP-binding protein domain 54 190 IPR005225 GO:0005525
Lan9g0551 439 Pfam Elongation factor Tu domain 2 268 338 IPR004161 GO:0005525
Lan9g0551 439 Gene3D Translation factors 249 379 - -
Lan9g0551 439 Pfam Elongation factor Tu C-terminal domain 343 437 IPR004160 -
Lan9g0551 439 Hamap Elongation factor Tu [tuf]. 42 439 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lan9g0551 439 Gene3D - 43 246 IPR027417 -
Lan9g0551 439 Pfam Elongation factor Tu GTP binding domain 51 244 IPR000795 GO:0003924|GO:0005525
Lan9g0551 439 PANTHER ELONGATION FACTOR TU 27 438 - -
Lan9g0551 439 TIGRFAM EF-Tu: translation elongation factor Tu 43 438 IPR004541 GO:0003746|GO:0005525|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0551 Lan-Chr9 8204750 8207719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0551 49 437 Eukaryotic Initiation Factors Gene Family AT5G60390 30.275 5.81e-46 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0551 K02358 - gmx:100791600 756.518