Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0542 ATGGCTCCTTCAAGAACAAGTGTGAAGCGTAAGCTGGAACATCATTTCGACAAGGAAAATGAAGAAGCAGAAGATCATAGACATTCTAAAGTTCTCGTCCTTGATTCAGATCATGATGTTCTTCCTGATATTCATCGCCACGTCTCACTCCTCACTTCTTCTGACTCTCCTTCTCTCAACACCGCTCTTCTTTTTCTCTCCCAATTCGCCACTAATGAGGAGTTCGTTGATGCTATCATTGAGAGTGGTGCTGTTCCTGCTTTGGTCAAACATTTACAACTTCAACAACAACGACAACAAGAAGATCCAATTCTTAACAACTCTTCCCGCTACGACGTGCAGATCAAATGTGCCTATATTCTTGGCCTTCTTGCTCTCAAGCCAGAGCAGCAACTATTGATTCATAATGCTGGAGCATTACCCTATCTTATAGATTTATTAAAAATGTGGGACAATCGCAACAAAACCATCCCTTTAGGACTTCCTTGTCTTCTTAGAAGAGCAGCTGATGCTATAACCAATCTGGCACATGAAAATAGCGTCATCAAAAACTTTCTAAGGATCAAAGGTGCCATACCTCCTCTTGTGCAATTGCTTGAATTCACTGATACGAAGGTACAAAGGGCAGCTACGGGAGCCTTGAGAACTCTCGCTTTTAAGAATTTTGACAATAAGAAACAGATTATTGGATGCAATGCATTGCCGCCTCTTACAATATTGCTTCAATCACAGGATCCTACACTGCATTATGAGGCGGTTGGTGTCATTGGAAATCTTGTCCACTCTTCTTCGCCTGACATTAAAAAAGATGTTCTTCTAGCTGGAGTTTTGCAACCTGTCATTGGCATACTTAGTTCCAGCTGTTCTGAGAGTCAAAGAGAAGCCGCTCTCTTAATTGGCCAATTTGCCACAATAGACTCAGATTGCAAGAATCACATTGCACAAAGAGGGGGCATTACACCATTAGTTGAAATGCTCAAGTCCTCAGACACACATGTTAGGGAAATGTCAGCTTTTGCACTTGGGAGGTTGGCACAGAACTCGCACAACCAAGCTGGTATTGCTCATAATGGAGGTATAGAGCCTCTACTCAGTCTTCTTGGCTCAAAGAGTGGGGCTATCCAACACAATGCAGCTTTTGCTCTCTATGGTCTTGCTGATAATGAGGACAATGTTTCAAGTATTATCAAGGCTGGTGGTTTACAAAAATTGCAGGAAGGAATTTTTAGAGCTCAACCTACAAAAGAGTGTGTGGCAAAGACATTAAAAAGATTAGAGGATAAGATGCATGGACTAGTATTGAGACATGTGTTGTATCTTATGCGATTTGCAGAGAAGAGCGTCCAAATACGTATAGCTCTTGCCCTTGCTCATCTGTGTTCTGATAATAATCGTAAATCCATTTTCATTGACAACAATGGATTAGAATTGCTACTGGATCTTCTTGAATCTACCTCTCTAAAGCAGAGGTGTGATGCTGCAGCGGCACTTTATAAGTTGGCTACCAAAACCACAGCCTCTCCTCTTGTTGATGCTGCTCCTCCATCACCAACTCTTCAGGTGTACTTGGGTGAGCAATATGTAAACAATCCTAAAGATTCTGATGTCACATTCTTGGTTGAAGGTAAAAGGTTTTATGCTCATAGAAAGTGTTTACTTGCTTCCTCTGATACGTTCCGTGCAATGCTTGATGGTGGTTATAGAGAAAGAGAAGGGAAAGACATAGAGATTCCAAATATTAACTGGGGTGTCTTTAAGTTGATGATGAGGTATATATATACTGGAACAGTGGATGTCAATTTGGATATTGCTCATGATCTCCTCAAAGCTGCTGATCAGTATCTTCTTGAGGGTCTTAAGCGTATTTGCGAATATGCTATTTCTCAGGACATCTCGGTGGATAATGTTTTCGAAATGTACAATATGTCACAGCCTTTCAATGCTACGTCGTTAAGACATGCATGCATACTGTTTATGTTGGAGCATTATGAAAAATTACGAGCCGAACCATGGTTTTGCAGTCTGGTTCACTGCAGCATACCAGACATACGCCAATTATTTTCAACCTTACTTACCAAGCCCTACTCAGCTGATTCGTGA 2100 0.4129 MAPSRTSVKRKLEHHFDKENEEAEDHRHSKVLVLDSDHDVLPDIHRHVSLLTSSDSPSLNTALLFLSQFATNEEFVDAIIESGAVPALVKHLQLQQQRQQEDPILNNSSRYDVQIKCAYILGLLALKPEQQLLIHNAGALPYLIDLLKMWDNRNKTIPLGLPCLLRRAADAITNLAHENSVIKNFLRIKGAIPPLVQLLEFTDTKVQRAATGALRTLAFKNFDNKKQIIGCNALPPLTILLQSQDPTLHYEAVGVIGNLVHSSSPDIKKDVLLAGVLQPVIGILSSSCSESQREAALLIGQFATIDSDCKNHIAQRGGITPLVEMLKSSDTHVREMSAFALGRLAQNSHNQAGIAHNGGIEPLLSLLGSKSGAIQHNAAFALYGLADNEDNVSSIIKAGGLQKLQEGIFRAQPTKECVAKTLKRLEDKMHGLVLRHVLYLMRFAEKSVQIRIALALAHLCSDNNRKSIFIDNNGLELLLDLLESTSLKQRCDAAAALYKLATKTTASPLVDAAPPSPTLQVYLGEQYVNNPKDSDVTFLVEGKRFYAHRKCLLASSDTFRAMLDGGYREREGKDIEIPNINWGVFKLMMRYIYTGTVDVNLDIAHDLLKAADQYLLEGLKRICEYAISQDISVDNVFEMYNMSQPFNATSLRHACILFMLEHYEKLRAEPWFCSLVHCSIPDIRQLFSTLLTKPYSADS* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0542 699 SMART arm_5 306 346 IPR000225 GO:0005515
Lan9g0542 699 SMART arm_5 221 261 IPR000225 GO:0005515
Lan9g0542 699 SMART arm_5 462 502 IPR000225 GO:0005515
Lan9g0542 699 SMART arm_5 264 304 IPR000225 GO:0005515
Lan9g0542 699 SMART arm_5 347 387 IPR000225 GO:0005515
Lan9g0542 699 SMART arm_5 127 177 IPR000225 GO:0005515
Lan9g0542 699 SMART arm_5 179 219 IPR000225 GO:0005515
Lan9g0542 699 SMART arm_5 72 126 IPR000225 GO:0005515
Lan9g0542 699 Gene3D - 431 513 IPR011989 -
Lan9g0542 699 Gene3D - 266 430 IPR011989 -
Lan9g0542 699 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 4 699 - -
Lan9g0542 699 MobiDBLite consensus disorder prediction 7 27 - -
Lan9g0542 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 358 400 IPR000225 GO:0005515
Lan9g0542 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 190 218 IPR000225 GO:0005515
Lan9g0542 699 Gene3D Potassium Channel Kv1.1; Chain A 525 669 IPR011333 -
Lan9g0542 699 SMART BTB_4 534 631 IPR000210 GO:0005515
Lan9g0542 699 CDD BACK_ARIA_like 630 693 - -
Lan9g0542 699 Pfam HEAT repeat 321 347 IPR000357 GO:0005515
Lan9g0542 699 Pfam Armadillo/beta-catenin-like repeat 188 218 IPR000225 GO:0005515
Lan9g0542 699 Pfam Armadillo/beta-catenin-like repeat 223 260 IPR000225 GO:0005515
Lan9g0542 699 Pfam BTB/POZ domain 527 629 IPR000210 GO:0005515
Lan9g0542 699 Gene3D - 157 265 IPR011989 -
Lan9g0542 699 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 699 IPR044282 -
Lan9g0542 699 SUPERFAMILY POZ domain 526 630 IPR011333 -
Lan9g0542 699 Gene3D - 44 156 IPR011989 -
Lan9g0542 699 SUPERFAMILY ARM repeat 44 406 IPR016024 -
Lan9g0542 699 MobiDBLite consensus disorder prediction 1 27 - -
Lan9g0542 699 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 317 359 IPR000225 GO:0005515
Lan9g0542 699 ProSiteProfiles BTB domain profile. 534 601 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0542 Lan-Chr9 8165390 8170125 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0542 284 504 U-box Gene Family AT2G23140 30.131 1.42e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lan9g0542 BTB 7.2e-24 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0542 - - qsu:112036025 843.188