Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0529 ATGAACTATTTATACCCAGTGAAAGAAGAATACTGGGAACAAGCATCATCATCATCATCAATATACCACATAGAAAGTGGTAATGATTCATCAATGGCTCCTCTTATTCCTCCAAAACCAATGAATGGTCTTCATGAGGCAGGGCCACCTCCATTTCTAACAAAGACTTTTGATGCAGTTGATGATCCAACCACCAATCACATAGTTTCATGGACTATAAATGGTTCTAGTTTTGTTGTTTGGGATCCACATGCTTTCTCTGGGACCCTCCTTCCTAGATACTTCAAGCACAACAATTTCTCTAGCTTTGTTAGACAACTAAACACTTATGGTTTTAGAAAAAATGATCCAGATAGATGGGAATTTGCAAATGAAGGATTCCTTAGAGGTCAAAGGCACCTATTAGGTAACATAAGAAGAAGAAAAGCTCCTTCACAACCTAGTACTACTTTGCAACAAGCACAAGAAGGCCATTATGTTGAAGTTGGAAGTTTTGGACTAGACGACGAGATCGATCATTTGAGGCGCGACAAGGAAGTACTAATGATGGAGCTTATGAAACTTAGACATCAGCAACAGAATACAAGATCTTATCTTATGGAAATGGAGGAAAGGTTGCAAGGGACAGAAATGAAGCAGCAACAAATGATGGCTTTCTTAGCTAGAGCTATGAGAAATCCAACTTTTATTCAGCAACTAGTACAACAGAAAGAGAAAAGAAAGGAGCTTGAAGAAGGTATCACTAAGAAGAGAAGAAGACCAATTGATCAAGGACCTAGTAGTAGTGTGAAAGTTGAGCCACTAGAGTTTGGTGAATATGGATATGAAGTTTCTGAGTTGGAAATGCTGGCTATGGAAATGCAAGGATTTGGTAGAGGGATGAGAGAACATGAAGAAGAGAGGGTGGATAAAGAACTTGATGAAGGGTTTTGGGAAGAACTTTTCAGTGAGAATTCTGAGGGTGAATTAGACATAATAACTTCTCAAGGCAGGTTGCAAATGCAGCTGCTGCTTGAACAAGAATCTGTAGTAGTGACAGAGATTCTGTCATTATTCACTCAAGATTATTCAGAAGCTGTAGAATGGATACATGATGTTGCTGATCTACAAGAATCATAA 1119 0.387 MNYLYPVKEEYWEQASSSSSIYHIESGNDSSMAPLIPPKPMNGLHEAGPPPFLTKTFDAVDDPTTNHIVSWTINGSSFVVWDPHAFSGTLLPRYFKHNNFSSFVRQLNTYGFRKNDPDRWEFANEGFLRGQRHLLGNIRRRKAPSQPSTTLQQAQEGHYVEVGSFGLDDEIDHLRRDKEVLMMELMKLRHQQQNTRSYLMEMEERLQGTEMKQQQMMAFLARAMRNPTFIQQLVQQKEKRKELEEGITKKRRRPIDQGPSSSVKVEPLEFGEYGYEVSELEMLAMEMQGFGRGMREHEEERVDKELDEGFWEELFSENSEGELDIITSQGRLQMQLLLEQESVVVTEILSLFTQDYSEAVEWIHDVADLQES* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0529 372 Pfam HSF-type DNA-binding 52 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan9g0529 372 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 18 330 - -
Lan9g0529 372 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 330 IPR027725 -
Lan9g0529 372 Coils Coil 233 253 - -
Lan9g0529 372 SUPERFAMILY "Winged helix" DNA-binding domain 48 141 IPR036390 -
Lan9g0529 372 Coils Coil 171 191 - -
Lan9g0529 372 Gene3D - 44 142 IPR036388 -
Lan9g0529 372 PRINTS Heat shock factor (HSF) domain signature 52 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan9g0529 372 PRINTS Heat shock factor (HSF) domain signature 90 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan9g0529 372 PRINTS Heat shock factor (HSF) domain signature 103 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lan9g0529 372 SMART hsfneu3 48 141 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0529 Lan-Chr9 8098789 8102829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0529 38 317 HSF AT3G22830 54.711 2.31e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lan9g0529 HSF_DNA-bind 9.6e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0529 K09419 - gmx:100794264 483.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0529 9 8098789 8102829 Lan5g1262 5 26307232 26310361 LSH
Lan9g0529 9 8098789 8102829 Lan9g0529 9 8098789 8102829 PCT
Lan5g1262 5 26307232 26310361 Lan9g0529 9 8098789 8102829 PCT
Lan9g0529 9 8098789 8102829 Lan5g1262 5 26307232 26310361 PCT