Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0516 ATGGACACTCACTCTCACGGCGGTGCCGGAAACCTTCGTTCCCGGAGCTCCCAATCCCAATCCCCTTCTCACTCCACCACCTCCTCCATCCACAAGCGCAAAATCTCTTCCTCCTTCGACCCCACCCTCACAACCAACGACGACCTTGATAGCATCTCCGCCCGTGCCAATCACTCCGATGACGATTCGGAAGAAGATGCCGTGGTGGATGACTATGAGGATAACTTCGATCAGGACAACGGTTCCTCGATGCGTACCTTCACCGCTGCGAGGCTAGACAATAGCACTAACAACACCACCAACCCTAGTTCTGCTCCAAGGAATAGTAAGCGCGATAATAATAACAATAATTCTGGTGTTAAGATTGAGAATTCTGATTCCGTCACCGCCAAAGATGCTGGTGCTGGCTCCGGGAGTTCTGTACCGGGGACTGTGGTTAAAGAGGACGCGGCTATGATATTCACTGATAATTTACAGACTAGTGGGGCTTACACCGCTAGGGAAGAGAGTCTTAAGAAAGAGGAGGAAGCAGGAAGGCTCAAATTTGTATGTCTTTCGAATGACGGTATTGATGATCATATGGTTTGGTTGATAGGATTGAAGAATATATTTGCTAGACAACTTCCGAACATGCCTAAGGAGTACATTGTCCGACTTGTTATGGATAGGACCCATAAGTCTGTAATGGTCATAAGACATAATCACGTCGTTGGAGGCATTACATATCGTCCATATGTAACCCAGAGGTTTGGTGAGATAGCCTTCTGTGCGATAACAGCTGATGAGCAAGTAAAAGGTTACGGTACCAGATTGATGAATCACTTAAAACAGTATGCACGCGATTTAGATGGGTTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTGTCAAACAGGGATTTACGAAAGAGATCCACTTGGACAAAGATCGATGGCAAGGTTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATTGATCCAAAGCTTCCTTACACTGATTTGTCAACTATGATTCGCCGACAAAGGCAGGCAATTGATGAAAAGATCAGAGAGCTGTCAAACTGTCATATTGTTTATCCTGGAATTGATTTCCAGAAGAAAGAAGCTGGTATTCCAAAAAAAATTATCAAAGATATCCCTGGTTTGAGAGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGTTTCCGAACTTTAACTGTTTCTACAGATGGTGCTGTAAATCAAAAACATTTGACTGCTTTTATGCGTTCTCTTCTAAAGTCAATGCACGATCATGCTGATGCTTGGCCATTCAAGGAACCAGTTGATGCACGGGATGTTCCAGATTATTATGACATCATCAAAGATCCAATGGATTTGAAGACAATGAGTAAGAGGGTGGAATCAGAGCAATATTATGTCACATTTGAGATGTTTGTTGCGGATGTCAGAAGAATGTTTTCGAATGCGCGCACTTACAACTCTCCAGAAACCATTTACTACAAATGTTCTACAAGGCTAGAAGCACACTTTCACAGCAAAGTGGCATTGGGACTACAATCTGGTACCAAAATCCAATAG 1590 0.4358 MDTHSHGGAGNLRSRSSQSQSPSHSTTSSIHKRKISSSFDPTLTTNDDLDSISARANHSDDDSEEDAVVDDYEDNFDQDNGSSMRTFTAARLDNSTNNTTNPSSAPRNSKRDNNNNNSGVKIENSDSVTAKDAGAGSGSSVPGTVVKEDAAMIFTDNLQTSGAYTAREESLKKEEEAGRLKFVCLSNDGIDDHMVWLIGLKNIFARQLPNMPKEYIVRLVMDRTHKSVMVIRHNHVVGGITYRPYVTQRFGEIAFCAITADEQVKGYGTRLMNHLKQYARDLDGLTHFLTYADNNAVGYFVKQGFTKEIHLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKKEAGIPKKIIKDIPGLREAGWTPDQWGHSRFRTLTVSTDGAVNQKHLTAFMRSLLKSMHDHADAWPFKEPVDARDVPDYYDIIKDPMDLKTMSKRVESEQYYVTFEMFVADVRRMFSNARTYNSPETIYYKCSTRLEAHFHSKVALGLQSGTKIQ* 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0516 529 ProSiteProfiles Bromodomain profile. 433 504 IPR001487 GO:0005515
Lan9g0516 529 SMART bromo_6 414 523 IPR001487 GO:0005515
Lan9g0516 529 MobiDBLite consensus disorder prediction 79 134 - -
Lan9g0516 529 CDD NAT_SF 227 282 - -
Lan9g0516 529 Pfam Bromodomain 426 508 IPR001487 GO:0005515
Lan9g0516 529 Gene3D - 413 525 IPR036427 GO:0005515
Lan9g0516 529 PANTHER GH11602P 1 529 IPR037800 GO:0004402
Lan9g0516 529 Pfam Acetyltransferase (GNAT) family 226 305 IPR000182 GO:0016407
Lan9g0516 529 ProSitePatterns Bromodomain signature. 438 496 IPR018359 -
Lan9g0516 529 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 180 334 IPR000182 GO:0016407
Lan9g0516 529 MobiDBLite consensus disorder prediction 1 142 - -
Lan9g0516 529 PRINTS Bromodomain signature 436 449 IPR001487 GO:0005515
Lan9g0516 529 PRINTS Bromodomain signature 450 466 IPR001487 GO:0005515
Lan9g0516 529 PRINTS Bromodomain signature 485 504 IPR001487 GO:0005515
Lan9g0516 529 CDD Bromo_gcn5_like 421 518 - -
Lan9g0516 529 PANTHER BNAC04G26160D PROTEIN 1 529 - -
Lan9g0516 529 SUPERFAMILY Bromodomain 403 519 IPR036427 GO:0005515
Lan9g0516 529 MobiDBLite consensus disorder prediction 63 77 - -
Lan9g0516 529 Gene3D - 176 340 - -
Lan9g0516 529 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 193 334 IPR016181 -
Lan9g0516 529 MobiDBLite consensus disorder prediction 9 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0516 Lan-Chr9 7976712 7983215 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lan9g0516 Bromodomain 2.1e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0516 K06062 - gmx:100791610 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0516 9 7976712 7983215 Lan5g1261 5 26297959 26305490 LSH