Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0512 ATGGCAAATCAGACAGTGAAAGTGAGAAGAGACAAGATTGTAGCATGCATGACTTGTACTATATGTAACAATCTCTTCAAAGATGCTACAACTATATCTGAATGTCTTCACACGTTTTGCAGGAAGTGCATTTGTGATAAAATTACGGATGAGGAATTGGAATGCTGTCCAATATGCGACATTGATTTGGGTTGTGTTCCGCTCGAAAAACTAAGACCAGACCACAGTTTGCAAGATGTAAGGTCCAAAATTTTCCCCTTAAAGGGAAGAAAGCCGAAGGCACCTGAAGTTATCCCGTCTGAACCGTTAACATCTAGACGAAAGGAAAGATCTCTTTCATCTTTAGTGGTTAGCACTCCAAGGGTATCATCTTCACAAGTAACCATGACAGGAAGAAGAACAAAACCTACCAGAAAGGCTAGCGGTCTTCATGGCTCGAGTTTTTCAATCGAAAATGCGATTAAAAAAGAGGAAGAGTTACTCGGAGATCATTCAGAGAGTTCAAGCTCGCATGACTCTTCAAGTAAATTTGCCGAGAATACTGGACAGAGTTTGTCCCCTTGTGAGGGTAGTGAATCCATACCAAATAAAGAAACCGAGAACGGTGCTGAACCATGGGATGCAAAATTGGATCTTTGGAAACCTTTGAATTGCTTAGTAGAGGTTGCAAGTAGGACTAAATCTTTCAAGTCTAGCGTGCAAGGATCCGATGCTAAACTAGAGCCTCTTCAAGCAAACGAGAGTGACTCACAAGTGAAGAAAGCCAAAAATAAGGAAAATAAACGCAAAGCGAAAGTTGAGGACGAAAAGATTAGCACTCATCCTGTGTCTCCAGATACAGCAAAACCGAAGAAATTGCGCAGAATTCGCCGGAAAAAGGAACCTGATTTTGGACAATCACGCATAACACTGCAGGCTGTGGTGGATTCGAACTGCACTAAACTCTTACGAACCGGTCCTATTTGGTTTTCCTTGGTAGCTTCAGAAAACCAGGAAGGAGATGCACCGTTGCCTCAAATTCCTTCCAGTTTTGTGAGAATAAAGGATGGAAATATACCTGTCTCGTTTATCCAGAAATACTTAATGAAGAAACTAGAGCTGAACAGCGAAGCTGAGGTGGAGATTAAATGCATGGGACAAACAGTGTTACCAACACTTAAGCTACATAATTTGGTAGAGTTATGGCTTCAAACAACATCTTCTACATCACACAGAATTTCAGCAACAATTGGGTCCACAGCAAAGGATTTTGTAATGGTCTTGGCCTATGCTAGGAAACTCCCTCACCCTTCAAACTCACAATTCTAA 1308 0.4144 MANQTVKVRRDKIVACMTCTICNNLFKDATTISECLHTFCRKCICDKITDEELECCPICDIDLGCVPLEKLRPDHSLQDVRSKIFPLKGRKPKAPEVIPSEPLTSRRKERSLSSLVVSTPRVSSSQVTMTGRRTKPTRKASGLHGSSFSIENAIKKEEELLGDHSESSSSHDSSSKFAENTGQSLSPCEGSESIPNKETENGAEPWDAKLDLWKPLNCLVEVASRTKSFKSSVQGSDAKLEPLQANESDSQVKKAKNKENKRKAKVEDEKISTHPVSPDTAKPKKLRRIRRKKEPDFGQSRITLQAVVDSNCTKLLRTGPIWFSLVASENQEGDAPLPQIPSSFVRIKDGNIPVSFIQKYLMKKLELNSEAEVEIKCMGQTVLPTLKLHNLVELWLQTTSSTSHRISATIGSTAKDFVMVLAYARKLPHPSNSQF* 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0512 435 MobiDBLite consensus disorder prediction 251 283 - -
Lan9g0512 435 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Lan9g0512 435 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Lan9g0512 435 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 IPR044807 GO:0004842
Lan9g0512 435 MobiDBLite consensus disorder prediction 109 148 - -
Lan9g0512 435 MobiDBLite consensus disorder prediction 88 148 - -
Lan9g0512 435 SMART ring_2 19 59 IPR001841 -
Lan9g0512 435 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Lan9g0512 435 MobiDBLite consensus disorder prediction 230 285 - -
Lan9g0512 435 MobiDBLite consensus disorder prediction 230 250 - -
Lan9g0512 435 MobiDBLite consensus disorder prediction 160 202 - -
Lan9g0512 435 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 3 426 - -
Lan9g0512 435 SUPERFAMILY RING/U-box 14 85 - -
Lan9g0512 435 MobiDBLite consensus disorder prediction 171 198 - -
Lan9g0512 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 116 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0512 Lan-Chr9 7942286 7948855 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0512 2 348 C3H Transcription Factor Family AT2G30580 52.571 1.10e-104 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0512 K16277 - gmx:100793731 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0512 9 7942286 7948855 Lan5g1255 5 26270850 26275074 LSH
Lan9g0512 9 7942286 7948855 Lan20g0165 20 1077311 1082390 PCT
Lan20g0165 20 1077311 1082390 Lan9g0512 9 7942286 7948855 PCT