Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0509 ATGGCGACTGAAGAGCCCATCGTTGACGTTCAGCCCACTCCGGCAGTGGAGGAGCCACAACCCACCGAAGAAAACACCGCCGCCGCCGCCGCTGAACAACCCGCCGTTGAAACAACTGAGCCTGAACCCAAGCCCGCTGTCAAGCCCAAGAAAGCTGCCAAGGAGCCCAAGCCCAAGAAGCCCGCAGCTCCTCGCAAACCCAAAACTTCTTCCCACCCCACTTACGAAGAGATGATTAAGGATGCGATTGTTTCACTGAAAGAGAGAACTGGTTCGAGTCAATACGCAATAGCGAAGTTTCTAGAAGACAAGCATAAGAACCTTCCATCAAACTTCAAGAAGCTTCTATTGAACCAACTCAAGAAGCTCGTTGCTTCTAACAAACTCGTTCAGGTCAAGCATTCCTACAAGCTTCCACCTCTCAGAGCTTCCGCTGCTGCAAAGCCCAAGCCCGCTGCCAAGGGAAAGCCTGCTGCTAAGCCTAAGCCCGCTGCAAAGCCTAAGCCCGCTGCTAAGGGGAAGGCTGTTGTTAAGGCTAAGCCTGCTGCCAAGCCGAAGCCCACTGCCAAGGTGAAGGTGATTGCTAAGGCGAAGCCCGCTGCTAAGCCCAAGCCTGCTGCAAGGCCCGCCAAGGCCTCGAGGACATCGAGCCGGACTTCTCCGGGTGGGAGGAAGGCGCCTGCTCCGAGACCAGCACCGGCGAAGAAAGCTGCTGCGGTGAAAAAGGCTGCTCCGGTGAAGAAGGCTGCTCCGGTGAAGAAGGCTGCACCGGCGAAGAAAGCTGCTCCAGTTAAGAAGGCGGCTCCGGCGAAGAAAGCAGCTCCGGCGAAGAGTGTGAAGTCTCCGGCGAAGAGGGCAGGGCCAAAGAGAGGAGGGAGAAAGTGA 885 0.5672 MATEEPIVDVQPTPAVEEPQPTEENTAAAAAEQPAVETTEPEPKPAVKPKKAAKEPKPKKPAAPRKPKTSSHPTYEEMIKDAIVSLKERTGSSQYAIAKFLEDKHKNLPSNFKKLLLNQLKKLVASNKLVQVKHSYKLPPLRASAAAKPKPAAKGKPAAKPKPAAKPKPAAKGKAVVKAKPAAKPKPTAKVKVIAKAKPAAKPKPAARPAKASRTSSRTSPGGRKAPAPRPAPAKKAAAVKKAAPVKKAAPVKKAAPAKKAAPVKKAAPAKKAAPAKSVKSPAKRAGPKRGGRK* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0509 294 SMART h15plus2 69 135 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan9g0509 294 PANTHER HISTONE H1.1 3 261 - -
Lan9g0509 294 Pfam linker histone H1 and H5 family 72 133 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan9g0509 294 Gene3D - 66 152 IPR036388 -
Lan9g0509 294 MobiDBLite consensus disorder prediction 43 62 - -
Lan9g0509 294 MobiDBLite consensus disorder prediction 140 294 - -
Lan9g0509 294 SUPERFAMILY "Winged helix" DNA-binding domain 68 149 IPR036390 -
Lan9g0509 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 71 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan9g0509 294 PRINTS Histone H5 signature 58 79 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan9g0509 294 PRINTS Histone H5 signature 85 102 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan9g0509 294 PRINTS Histone H5 signature 156 170 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan9g0509 294 PRINTS Histone H5 signature 207 226 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Lan9g0509 294 PANTHER HISTONE H1 3 261 - -
Lan9g0509 294 CDD H15 69 140 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan9g0509 294 MobiDBLite consensus disorder prediction 1 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0509 Lan-Chr9 7919732 7920969 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0509 68 151 Single Myb Histone (SMH) Gene Family AT1G72740 32.143 1.72e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0509 K11275 - egt:105952512 125.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0509 9 7919732 7920969 Lan4g1748 4 26135510 26136603 LSH