Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0507 ATGACAAAAAAGATGGGTGGTGATGGTGAGAGATTTTGTGAGAAGGAAGAAGTTAAGGCTATGCTGGAATCTGTGGTGGGAGCTGAAGCTGTTGCCTTTTTCAGTTCTGCAATTTCTAATAGTGTTTATTCTGATGTTATTGTTCCGCCGAGTCTTGAATCGAATCTTAACCTGCGGCTGCGCCACCTTGTTGAGGTGTCCAAGTGGGATTATGCCATTTTGTGGCAGGTTGTTGGTTTGAAATCTGGTGGATATGCTCTAAAATGGGGTGATGGGTATTGTCAGGATCGTAAGGATGGTCAAAGGAATGAGCCGAAAGAGGAGGATGTGGCGAAGAAGCGGCATGTGTTGCAGAAGCTTCATGAAGAATGTCGTGGATCTGAATCAAAAGAATCGAAAGAGGCCAATTATGGAAGTTTGGATAGGGTTTCGGATATGCAAATGTTTTACTTGACCTCAATGTATTATGTGTTTGGTTTCAATTCTCAGTGTGGCCCTGGTAGTTCCTTCAAGTCCGGTAAATCAATTTGGGCTTCTGATGCTGCTAGTTGTTTGAACCAATATGAATCGAGATCATTTCTCGGGAAATTGGCTGGTTTGAAGACGGTTGTTTTTGTGCCTATGAAGGCTGGGGTTGTTGAGCTTGGTTCGATGGAAATGATTCCTGAAGAGCAGAGTGTTTTGGAAATGGTAAAAACGATGTTTGAGGAATCTAGTTTTGGACAGGCAAAGATGTTACCGAAGATTTTCGGGCGTGAATTAAGCTTGGGGGACTCTAAATCTCAGTCGATGACTATTAGTTTCTCCCCGAAGGTGGAAGATGATTCTGGTTTCACTTCTGACTCTTTCGAACCACAAGCAATGGTTGCAAACCATGCTTATGGAAATTCTTCCAACAGGTGTGTAGGCGATAATAGCGAAACAAAATTGTTCCCTCAGTTCGGGAACTTTAATTCTCACGGACGGGTTTCATCTGTAGACCTTGGCAACGATGATGCATCATCGCCTCAAACAGATGAGAGGAAGCCAAGGAAGAGAGGAAGAAAGCCGGCAAATGGGAGAGAAGAAGCGCTGAATCATGTGGAAGCAGAGAGACAAAGACGAGAAAAGCTAAACCAAAGGTTCTATGCCTTAAGAGCTGTTGTTCCGAATATATCCAAAATGGACAAGGCGTCTCTTCTTGGCGATGCTATTACTCATATCACTGATCTCCAGAAGAAGATAAGGGTGTTGGAGTCTGAAAAAGGCATGATTAACAACAATAAGGACCATGATCAGTTGCCTATGCCGGATATTGATTTTCAGGCTAGACAGGACGATGGAGTCGTGACGGTGAGCTTCCCCTTGGATATGCATCCAGTTTCTGGAGTTGTTAAAGCTTTCAGGGAGCATCAAATTGTACCCGAAGAGTCCACTGTCTCAACCGCGCAGGATAAGGTGATTCATACATTTTCTATTAGAACTCAAGGTGGTGAAGCTGCTTCTATAATGTTGAAAGAAAAGCTTGAAGCATCTCTATTAAAAAATTGA 1530 0.432 MTKKMGGDGERFCEKEEVKAMLESVVGAEAVAFFSSAISNSVYSDVIVPPSLESNLNLRLRHLVEVSKWDYAILWQVVGLKSGGYALKWGDGYCQDRKDGQRNEPKEEDVAKKRHVLQKLHEECRGSESKESKEANYGSLDRVSDMQMFYLTSMYYVFGFNSQCGPGSSFKSGKSIWASDAASCLNQYESRSFLGKLAGLKTVVFVPMKAGVVELGSMEMIPEEQSVLEMVKTMFEESSFGQAKMLPKIFGRELSLGDSKSQSMTISFSPKVEDDSGFTSDSFEPQAMVANHAYGNSSNRCVGDNSETKLFPQFGNFNSHGRVSSVDLGNDDASSPQTDERKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITHITDLQKKIRVLESEKGMINNNKDHDQLPMPDIDFQARQDDGVVTVSFPLDMHPVSGVVKAFREHQIVPEESTVSTAQDKVIHTFSIRTQGGEAASIMLKEKLEASLLKN* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0507 509 SMART finulus 361 410 IPR011598 GO:0046983
Lan9g0507 509 MobiDBLite consensus disorder prediction 322 365 - -
Lan9g0507 509 Pfam Helix-loop-helix DNA-binding domain 359 405 IPR011598 GO:0046983
Lan9g0507 509 PANTHER MYC 9 507 IPR045084 GO:0003700|GO:0006355
Lan9g0507 509 Coils Coil 354 374 - -
Lan9g0507 509 MobiDBLite consensus disorder prediction 334 365 - -
Lan9g0507 509 PANTHER TRANSCRIPTION FACTOR BHLH3 9 507 - -
Lan9g0507 509 CDD bHLH_AtAIB_like 352 415 - -
Lan9g0507 509 Gene3D - 348 421 IPR036638 GO:0046983
Lan9g0507 509 Coils Coil 401 421 - -
Lan9g0507 509 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Lan9g0507 509 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 57 235 IPR025610 -
Lan9g0507 509 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 355 421 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0507 Lan-Chr9 7880186 7882389 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0507 9 506 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G16430 49.105 2.30e-159 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan9g0507 bHLH-MYC_N 6.7e-44 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0507 - - gmx:100819968 667.922