Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0494 ATGGATTTTGATTATTCTCTCTTCCAATACCAAAATCTTCACTTTTTCCCTTCAAACCATTCCTCTAATTTATTAGAAGAACCTTTCTCATTAGATGATGACTTACTCCTTTTCTTCAACAATGATAATGATAACACTATTCTTCCCTTCAATTCTAGTGACCACTCACAATCACTACAAACCAAAGAACCATCCTTCTCTGAATCGAACTCTTCCGGCTCACAAGGCAGCCTCGAGTCACAAGAAGTCTCTTCTAAAATTTATCTCGAGAACAGTTCATTACATAAAACTCTCACCTGGTGGAATTCAGATAAAATAAATATTGATACATTTATACCTGTAAACAAAGAAGTTGTTTCCGAAGCATCTAATAATGCAGAAAAGAGCGAAATCGAGGCATCACCACCACCACCATTAGAAAGTAACAAAGAAAAGAGGGTGTTTAGAGGAGTGAGGACAAGACCATGGGGTAAATATGCTGCTGAAATAAGAGATTCCACAAGGAAAGGAGTAAGAGTATGGATAGGAACTTTTGACACAGCTGAAGAAGCAGCTTTAGCTTATGATCAAGCAGCTTTTTCTACAAGAGGTTCATTGGCAGTGCTAAATTTCCCTGTGGAAGTTGTAAGGGATTCCCTCAAAGACATGTCAAATAATTTTAAGCCAAAATCAATTTTGGAAGATGGTTCTAATTTTTCTTCACCTGTTTTGGCACTCAAGAGAAAGCATAGCTTGATAAGAAAATCAAATAAGTTCAATAGTAATAAGAAGAACAAAAGGGTACAGAGGAATCAATTATTGGAGATAAGTGATTCCAAAAATGTGTTGGTTTTGGAAGACTTGGGTTCTGATTATTTGGACCAACTTTTGAGTTTGACTACTACTTAA 888 0.3604 MDFDYSLFQYQNLHFFPSNHSSNLLEEPFSLDDDLLLFFNNDNDNTILPFNSSDHSQSLQTKEPSFSESNSSGSQGSLESQEVSSKIYLENSSLHKTLTWWNSDKINIDTFIPVNKEVVSEASNNAEKSEIEASPPPPLESNKEKRVFRGVRTRPWGKYAAEIRDSTRKGVRVWIGTFDTAEEAALAYDQAAFSTRGSLAVLNFPVEVVRDSLKDMSNNFKPKSILEDGSNFSSPVLALKRKHSLIRKSNKFNSNKKNKRVQRNQLLEISDSKNVLVLEDLGSDYLDQLLSLTTT* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0494 295 MobiDBLite consensus disorder prediction 49 78 - -
Lan9g0494 295 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Lan9g0494 295 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Lan9g0494 295 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Lan9g0494 295 SUPERFAMILY DNA-binding domain 147 207 IPR016177 GO:0003677
Lan9g0494 295 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Lan9g0494 295 Pfam AP2 domain 147 197 IPR001471 GO:0003700|GO:0006355
Lan9g0494 295 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Lan9g0494 295 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Lan9g0494 295 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 117 292 - -
Lan9g0494 295 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 18 96 - -
Lan9g0494 295 MobiDBLite consensus disorder prediction 123 144 - -
Lan9g0494 295 PANTHER DNA-BINDING DOMAIN 18 96 IPR044808 GO:0003700|GO:0009873
Lan9g0494 295 PANTHER DNA-BINDING DOMAIN 117 292 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0494 Lan-Chr9 7304630 7305738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0494 144 290 AP2-EREBP Transcription Factor Family AT2G31230 52.663 1.13e-47 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lan9g0494 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0494 K14516 - gmx:100784784 231.876
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1337 11 20107406 20108299 Lan9g0494 9 7304630 7305738 PCT