Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0487 ATGACAGAATCTGACTATGGAAGAAATTCTTCCGAAGTGGAGATGGAAAATCTTACTGTCCCGCCTGGTTTTGCATCTCTGACATCTTTCTTTCTGAAAAGGGTCGAAAAGGTTAAGAAAACTGATAAATCTGAAACCGTTTCTGCATCTGAAGAAAAGTCTGAGATGAATAGCATTACTGCATGTAAGGATCGGCCATGGATACTCTTGGATGAAAGCAATCAGAAACCCGAGGAATCTCGCACTGAGCATCTTCCTATGGTTAAGGATCCCCCGATCAATGCTCGTCGTGTGAAGGTGACTCGTAGATGTCCGAAGTGCAGTAATTTTCTGAAGGTAACAGCAAGGTGGCATCCCAAGGATGCAAGAAAAGAAGTCCTGGAAGAAGCTCCGACTTTCCACCCAACAGAAGAGGAATTCAAAGACACACTCAAATATATTGCGAGCATACGTTCCACAGCAGAACCTTATGGAATTTGTCGTATTATTCCTCCTCTTTTCTGGAAACCACCGTGTACTCTTGAGGAAAAGAACATATGGGAGTTCTCCGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCAGCATGCACAAGAAACTATGACTAGCTCTTCCGAAAATACAAAGACCAAGAGAAGAAAAGGCACACCAGTTGCTTCGGACTCTCAGATAGAGAATGAAATCAGTTGCACCACAAATTACCAGAATCTTGAAGACTGTGTGTGTGAGTCTGTAGCTGGTCCTAAATTTAGTCTCAAAACATTCAAGAAATATGCAGATGAGTTCAAGACCCAATACTTCAATAACACAGACAAGAATATTGTCACCAATTCTGATATAAATTTAGCTATACCTCAAAATCAGTGGGAACCGTCTGTGGAGAATATTGAGGGTGAATATGGACGGATTGTTCAAAATCCAACTGAAGAAATTGAGGTGCTTTGTGGCAACACTTTCGACGCTGTAGTTCTTAGCAGTGGATTTCCAACCGTTTCTGATGATTCAGAGGCCTGCACTTTCCCCGAATATTTGAAATCTGGATGGAACTTGAATAATATACTTAAGCTGCCAGGGTCTCTTCTTTCTTTTGAAAGCTCCGAAGCTTCACGCAATTTTGTCCCCCGGATTAATGTAGGAATGTGCTTTTCTCCACTCTACTGGAGAGTTGAAGAGCACCAGTTATACTCGTTATCTTATATGCATTTGGGTGAACCTAAAGTGTGGTATTGCGTCCCTGGAAGTTTCGCTCTCAACTTCGAAGCAATTAGGAAGAAGTATCTCCCAGATTTGTGTGCAGAACAACCTGATAAGAATCACAATCTAGTGATGCAATTATCCTGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGCTGTGTTCAGTATCCTCGTGAGTATGTTCTTATCTTCCCGGGAGCATATCATTCTGGATTCAACTGTGGTTTCAACTGTTCTGAAGCTGTAAGTTTTGCTCCTCTTGAGTGGTTGCTTCGTGGACAGAATGTTGTGGATTTATATTGTGAAAAGAGGAGAAAGACATTACTTTCATATGATAAGCTTTTGCTAGGAGCGGCAAGAGAAGCTGCAAGGGCACGATGGGAAGTTGATCTGCGCATGATGAGGACACCGCAAAACATAGCAAGTAAAGATGCTTACCGAAGAGATGGTATCTTAGCAAAAGCTTTGGATTCTCGCATCAGGAGTGAAAGTTTAAAGAGGGAATATCTGTGCATTTCTTTGAAATCACAAAAAATGGATGGCACTTTTGATGCTACTGATAAAAGGGAATGCAGTATATGTCTCTGTGATCTATACTTTTCTGCGGTAGTGTGTTCATGTTCGGAAGACAAGTTTGTGTGTCCTGATCATGCAAAACAACTTTGTTCTTGCAACTGGAGCAAGAAAACTCTCCTCTACCGTTATGAAATCGGTGAGTTGAATCTTCTTCATCAAGCTTTGGATGGTAAATTAAGTTCAGTCTATAAATGGGCGAAAGAGGATCTTGGATTATCTATGACCTCCGTTGCCCCCAAGGATCGAAAACACCTGCCACAAAATGTAAGCAGTTCAACACCGGCTTCACAAGACTTGAAGATGAAGGAACCTAAATCGAAGACGGTTTCAGATGCAGACTCAAAACGGAAAGAACGTCTTTTGCAGGCGATAACAAATGCATCAAAAAGGAAACAAAATGAGGTTGAATCACAAGTTATGGGCACCTCTACCGACCCTTTTAGCAGTTCTTCGAAAATGAAAGTGAAAGAGAAAATTTTGGGGTTCCAATCTGCTAAAACATGCATTGGTGGAGGAGTCAATTCTGCTGACACCAAACCTGATATGAAGACACTTGGTGGTGGTAAGTTTTCGATTTCAAAGAAAGTAGAACCAAAAGTAACTTATCCGGTTTCTTCCGTCGCAAACTCACATTTCTTGACTCTAGTACAAGAAGGCAAGTTAGTTGAAATTTCATCTGATAGTAGTTGCACATCTTCCTCATCAGAATCTGATGACTAA 2526 0.4129 MTESDYGRNSSEVEMENLTVPPGFASLTSFFLKRVEKVKKTDKSETVSASEEKSEMNSITACKDRPWILLDESNQKPEESRTEHLPMVKDPPINARRVKVTRRCPKCSNFLKVTARWHPKDARKEVLEEAPTFHPTEEEFKDTLKYIASIRSTAEPYGICRIIPPLFWKPPCTLEEKNIWEFSEFVAQIQRIDGHQVQHAQETMTSSSENTKTKRRKGTPVASDSQIENEISCTTNYQNLEDCVCESVAGPKFSLKTFKKYADEFKTQYFNNTDKNIVTNSDINLAIPQNQWEPSVENIEGEYGRIVQNPTEEIEVLCGNTFDAVVLSSGFPTVSDDSEACTFPEYLKSGWNLNNILKLPGSLLSFESSEASRNFVPRINVGMCFSPLYWRVEEHQLYSLSYMHLGEPKVWYCVPGSFALNFEAIRKKYLPDLCAEQPDKNHNLVMQLSCSILKAEGIPVYRCVQYPREYVLIFPGAYHSGFNCGFNCSEAVSFAPLEWLLRGQNVVDLYCEKRRKTLLSYDKLLLGAAREAARARWEVDLRMMRTPQNIASKDAYRRDGILAKALDSRIRSESLKREYLCISLKSQKMDGTFDATDKRECSICLCDLYFSAVVCSCSEDKFVCPDHAKQLCSCNWSKKTLLYRYEIGELNLLHQALDGKLSSVYKWAKEDLGLSMTSVAPKDRKHLPQNVSSSTPASQDLKMKEPKSKTVSDADSKRKERLLQAITNASKRKQNEVESQVMGTSTDPFSSSSKMKVKEKILGFQSAKTCIGGGVNSADTKPDMKTLGGGKFSISKKVEPKVTYPVSSVANSHFLTLVQEGKLVEISSDSSCTSSSSESDD* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0487 841 ProSiteProfiles JmjN domain profile. 130 171 IPR003349 -
Lan9g0487 841 Pfam jmjN domain 131 164 IPR003349 -
Lan9g0487 841 MobiDBLite consensus disorder prediction 197 225 - -
Lan9g0487 841 MobiDBLite consensus disorder prediction 727 752 - -
Lan9g0487 841 SUPERFAMILY Clavaminate synthase-like 250 538 - -
Lan9g0487 841 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 85 756 - -
Lan9g0487 841 PANTHER LYSINE-SPECIFIC DEMETHYLASE 85 756 - -
Lan9g0487 841 Gene3D Cupin 115 495 - -
Lan9g0487 841 Pfam C5HC2 zinc finger 601 651 IPR004198 -
Lan9g0487 841 SMART JmjN_1 129 170 IPR003349 -
Lan9g0487 841 Pfam JmjC domain, hydroxylase 379 494 IPR003347 -
Lan9g0487 841 MobiDBLite consensus disorder prediction 702 726 - -
Lan9g0487 841 SMART cupin_9 348 511 IPR003347 -
Lan9g0487 841 MobiDBLite consensus disorder prediction 687 701 - -
Lan9g0487 841 MobiDBLite consensus disorder prediction 679 752 - -
Lan9g0487 841 ProSiteProfiles JmjC domain profile. 348 511 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0487 Lan-Chr9 7257025 7262676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0487 19 739 JUMONJI Transcription Factor Family AT1G08620 44.906 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lan9g0487 JmjC 1.6e-31 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0487 - - gmx:100804864 1036.94