LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan9g0486	ATGGATTCTGCAAGGAGTTGGCTTCAAAAGTTTCAGCCACGGGATAAAATGAGAGCTACTTCAAGGAAGAATGATGATAGTAATGGAGGAAATGAAGATTCGAGTGTGCCACTAGATGAAGCGGCTCTTTCCAATATCACAAAGCAAAAAGTTGCGGCCGCAAAGCAGTATATTGAGAACCATTACAAGGAGCAAATGAAGAGCCTTCAGGAGAGGAAGGAACGCCGAACCATCTTGGAAAAGAAGTTGGCTGATGCAGATGTTTCTGAGGAAGATCAAAACAACTTACTTAAGTTTTTAGAGAAAAAGGAAACTGAATATATGCGCCTTCAAAGGCATAAGATGGGTGTTGATGATTTTGAGTTATTGACTATGATTGGCAAAGGTGCATTTGGTGAGGTGAGAGTTTGTAGGGAAAAGACTACAGATCATGTATACGCAATGAAAAAGCTAAAGAAATCTGAGATGCTCCGTAGAGGCCAGGTCGAACATGTTCGAGCTGAGAGGAACCTCCTTGCAGAGGTTGACAGCAATTGCATAGTCAAACTCTACTGTTCTTTTCAGGATGATGAGTATCTGTATCTTATTATGGAATATCTACCGGGTGGGGATATGATGACTCTACTTATGAGAAAAGATACATTGGATGAAGATGAAGCCCGATTTTATGTCGGAGAAACAGTTCTGGCTATTGAATCTATACATAAACACAATTATATACACAGGGATATTAAGCCCGACAACTTATTACTTGATCGATATGGACATTTGAGATTGTCAGATTTTGGACTATGTAAACCATTAGATTGTAGCACACTTGAAGAGTCGGATTTTTCTCCAAATCAGAATGCAAATGCATCTCCACAGAATGATGAGCATGGAACTCCAAAACGCTCACAACAAGAACAATTAGATAATTGGCAGAAGAATAGGAGGACACTTGCTTATTCTACTGTCGGTACACCAGATTATATAGCTCCAGAAGTTTTATTGAAGAAAGGTTACGGGATGGAATGTGATTGGTGGTCGCTTGGAGCTATTATGTATGAAATGTTGGTCGGATATCCACCTTTTTATTCGGATGATCCAATGTCAACATGTAGGAAGATAGTAAACTGGAAATCTCACTTGAAATTTCCGGAAGAAGCAAGACTATCTCCAGAAGCTAAAGATCTTATTAGTAAGCTTTTGTGTAATGTTAACCAGAGGTTGGGATCAAACGGTGCAGCCGAAATAAAGGCTCATCCATTCTTTGAAGGCATTGAATGGGATAAGTTGTATCAAATGGAAGCTGCATTTCTTCCCGAGGTCAATGATGAGTTAGATACACAAAATTTTGAAAAGTTTGAAGAGGCCGACAACCATACTCAGTCATCGTCAAGAGTTGGTCCATGGAGGAAGATGCTTTCATCCAAGGACTTGAATTTTGTGGGATACACATACAAGAACTTTGAAATTGTCAATGATTATCAAGTTCCTGGGATGGCTGAATTGAAGAAAACCTCCAAATCAAAGGCTAGGCCATCAGTCAAGTCAATCTTTGGTGATAACGAGTCAGAGACATCGGAGGCGTCCGAGGCTTCAGAAGCCTCTACAAGCAATCAATCTGCTCATGGAAGTTAG	1623	0.4011	MDSARSWLQKFQPRDKMRATSRKNDDSNGGNEDSSVPLDEAALSNITKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCREKTTDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLDEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEESDFSPNQNANASPQNDEHGTPKRSQQEQLDNWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLSPEAKDLISKLLCNVNQRLGSNGAAEIKAHPFFEGIEWDKLYQMEAAFLPEVNDELDTQNFEKFEEADNHTQSSSRVGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKTSKSKARPSVKSIFGDNESETSEASEASEASTSNQSAHGS*	541

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan9g0486	540	ProSitePatterns	Protein kinases ATP-binding region signature.	126	149	IPR017441	GO:0005524
	Lan9g0486	540	ProSiteProfiles	AGC-kinase C-terminal domain profile.	419	491	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Lan9g0486	540	PANTHER	NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE	14	522	-	-
	Lan9g0486	540	MobiDBLite	consensus disorder prediction	9	29	-	-
	Lan9g0486	540	MobiDBLite	consensus disorder prediction	514	540	-	-
	Lan9g0486	540	Gene3D	Phosphorylase Kinase; domain 1	118	447	-	-
	Lan9g0486	540	Pfam	Protein kinase domain	121	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan9g0486	540	Gene3D	Transferase(Phosphotransferase) domain 1	204	436	-	-
	Lan9g0486	540	MobiDBLite	consensus disorder prediction	276	305	-	-
	Lan9g0486	540	ProSiteProfiles	Protein kinase domain profile.	120	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan9g0486	540	SMART	pkinase_C_6	419	483	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Lan9g0486	540	SMART	serkin_6	120	418	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lan9g0486	540	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	239	251	IPR008271	GO:0004672\|GO:0006468
	Lan9g0486	540	Pfam	Protein kinase C terminal domain	437	481	IPR017892	GO:0004674\|GO:0005524\|GO:0006468
	Lan9g0486	540	PANTHER	SERINE/THREONINE-PROTEIN KINASE	14	522	-	-
	Lan9g0486	540	SUPERFAMILY	Protein kinase-like (PK-like)	93	471	IPR011009	-
	Lan9g0486	540	MobiDBLite	consensus disorder prediction	498	540	-	-
	Lan9g0486	540	CDD	STKc_NDR_like	118	482	-	-
	Lan9g0486	540	MobiDBLite	consensus disorder prediction	1	39	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan9g0486	Lan-Chr9	7250450	7256157	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan9g0486	1	511	AGC Kinase Gene Family	AT1G03920	78.220	0.0	855

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_NDR	Lan9g0486		Pkinase	2.1e-64	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan9g0486	K08790		-	gmx:100805940	964.14

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan20g0999	20	10711675	10721517	Lan9g0486	9	7250450	7256157	PCT