Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0485 ATGATGGATCATGTTGTTGGTGGCAAGTTTAAACTGGGAAGGAAAATTGGGAGTGGTTCTTTTGGGGAGCTTTATATAGCTGTTAATGTACAAACTGGAGAGGAGGTAGCTATCAAGCTGGAACCTGTGAAGACCAAGCATCCACAACTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACTGGGATTCCCCATCTCAAGTGGTTTGGAGTTGAGGGAGACTACAATTGCATGGCTATTGACCTTCTTGGACCAAGCCTCGAAGATTTGTTCAATTACTGCAACCGAAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAGTATATGCATTCAAGAGGTTTCCTTCACCGTGACATAAAGCCAGACAATTTTCTAATGGGCCTTGGTCGTAAAGCAAACCAGGTGTACATCATTGACTATGGTCTCGCGAAAAAATATCGGGATCTTCAGACCCATAGGCACATACCGTACAGGGAGAACAAAAACCTTACAGGAACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTCGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGTACCAAAAAACAAAAATACGACAGAATCAGTGAGAAGAAGATGTCTACTCCCGTCGAGGTTCTCTGTAAGTCATATCCCTCAGAGTTTGTTTCATATTTCCATTACTGTCGATCATTGCGGTTTGAAGACAAGCCAGATTATTCATATTTAAAGAGGCTTTTTAGAGATTTATTCATTCGAGAAGGCTATCAGTTTGACTATGTTTTTGACTGGACTGTATTGAAGTATCCACAGATTGGTAGCAGCAGCAGCAGCTCTAGAGGGCAGCATGGCAGTGGCAAGGCAGCTATGAATCCGGGACCATCTGTACAAAAGCCGGAAAAGATCTCAGCTGGGAAAGAGATTCGAGAGAAATTCTCTGGCGCTGTTGAAGCATTCCCCCGAAGGAACCCGACAAGTTCTAGTCCTCGCGATGATCACATCAAACATAGGTCTTTTGATGAAGTAGCAGCACACAAGGATGTGCATGATAATCAAGAGAAGGGATACAGTTCGTCTCGATACGGCAGCAGTTCCAGAAGAGCAATAGCATCATCAGCCAGGCCAAGTTCCTCAGGTGACCATACTGACAGCCGTACTGGCCGGGTGACCTCAACTGCCAGCCGTCCATCTACAGCACATAGAACTCAACCTGTGTATGAGACTAAACAAGCAAGTTTCACTCGCTCCGGTTCTATAAGAGGCAATCGCGATGATCCTCTTAGGAGCTTTGAGCTCCTCTCTATCCGGAAGTAA 1395 0.4423 MMDHVVGGKFKLGRKIGSGSFGELYIAVNVQTGEEVAIKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNCMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDRISEKKMSTPVEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTVLKYPQIGSSSSSSRGQHGSGKAAMNPGPSVQKPEKISAGKEIREKFSGAVEAFPRRNPTSSSPRDDHIKHRSFDEVAAHKDVHDNQEKGYSSSRYGSSSRRAIASSARPSSSGDHTDSRTGRVTSTASRPSTAHRTQPVYETKQASFTRSGSIRGNRDDPLRSFELLSIRK* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0485 464 ProSiteProfiles Protein kinase domain profile. 10 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g0485 464 Pfam Protein kinase domain 11 228 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g0485 464 MobiDBLite consensus disorder prediction 302 328 - -
Lan9g0485 464 MobiDBLite consensus disorder prediction 341 464 - -
Lan9g0485 464 CDD STKc_CK1_delta_epsilon 9 283 - -
Lan9g0485 464 MobiDBLite consensus disorder prediction 382 446 - -
Lan9g0485 464 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Lan9g0485 464 PANTHER CASEIN KINASE I-LIKE PROTEIN 2 451 - -
Lan9g0485 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lan9g0485 464 SMART serkin_6 10 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan9g0485 464 Gene3D Transferase(Phosphotransferase) domain 1 1 339 - -
Lan9g0485 464 MobiDBLite consensus disorder prediction 353 381 - -
Lan9g0485 464 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524
Lan9g0485 464 MobiDBLite consensus disorder prediction 448 464 - -
Lan9g0485 464 PANTHER CASEIN KINASE-RELATED 2 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0485 Lan-Chr9 7241635 7247884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0485 3 214 Miscellaneous Gene Families AT1G29230 27.397 1.78e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan9g0485 Pkinase 2.5e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0485 K08960 - cam:101493293 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0485 9 7241635 7247884 Lan5g1239 5 26194764 26200876 LSH
Lan9g0485 9 7241635 7247884 Lan20g1000 20 10732484 10739472 PCT
Lan20g1000 20 10732484 10739472 Lan9g0485 9 7241635 7247884 PCT