Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0480 ATGAGTCACTCATTGAATCCATGGATGTTCAATTTTCAGAAGCTCGCTCTTGAACTCAAATGTCCTCTCTGTTTGAGCTTATTCAAGGATCCGGTGTTACTTCCGTGCAATCATTTGTTTTGCAAGTCATGCTTAGGTGAATTTACAATGGGTTTGATGAAATGTGAATGTGCTGTGTGTAAAACTAAGTATGCTGAAAGAGATGTGAGGAACATGCCTTTTGTGGAAAACATGGTATCCATCTATAGAAGCTTGGAGTCTACCTTCTCTCCTAGTTTGCTTCCACAGCGTTCTTCTGATGACGTGAGGGTTTTGACACCATGTCAAGCATCTCTCAATTCAAGCTATGGTAATAAAAAGATGGATAAGGTTCCGTCGAGTTTACCTCATTCTAAAGAGGTTGGGGCTGGAAAGAGTCACAAGTTCAAGGGGAGTGACACTGTAGTGCATGATAAAACTGAGGGGCTTGAGTTGTCTCCTGGGGGAAGGGTTGACTCTCACAGTACAGGAAAGCCTAATCCAATGCAGCATTCCCAGATGGCAGTTGGTGGGCATGGAGACTGCAAAGTTATGGAAATGGATGTGAATCAAGTGACACAATCGGCAACAGGCAGCCCTCCATTTTGTGACACCAAAGGTTCAGAGTGCAGTGATCTTGACAGTGAGCATCCATTGGTAGCTGGAAGAGTGGAGAAATCTTCATTGAAGAGAGCAACCACCTTTGAATCTGATGGTCTGATGATAGAGCTCAAAAGACAAAAAAATAATTTGGCTGCAGATGGCTATGTTCAGTCTAGCTCCACATATCATAATAATTTAGTGGGTTCCTGCTCTAACATGGACCTTAAATCTGGAATGGGCCCTGGTGCAATGTTTGTTGCAAAACCAGATGATTCACACACAAGTACAAGCATCTGTTCATTTTGCCAGTCCTCTAAAATCTCAGAGGCTACTGGGGAAATGTTGCATTCTGCAAATGGGTATATGGTTACAGGAGATAAAGCAATGCAACCGAATGTCATACATGTGCATAAAACTTGTGCTAACTGGGCACCACAAGCGTATTTTGTTGATGACATTGTCAAGAATTTGAAATCTGAAGTGGCTAGGGGATCAAAATTAAAATGCAGCAAATGTGGTCTAAAAGGAGCTGCTCTTGGCTGCCTTGTCAAATCATGTAGAAAAACATATCATGCTCCTTGTGCAATGGAGATATCGACTTGCCGTTTCGATCATGAGAATTTTCTAATGCTCTGTCCTGCTCATGCTCGTGTCAAATTTCCAAATGAGAAATCCCGGTCTAAGAAACAACCCACTCAGAACCTTCCAGCTTTAACTCATCTGCCGTCTCATGAGTCAAACCCTCTTCCAGCTTTACAAGATGATAGTAAGAAATTGGTATTTTGTGGATCTGCTCTACCACCTAACGAAAAGGCACTTTTCGTCAATTTTGCAAGTAAGGTTGGTGCTGTGGTGACCAAGTATTGGACCCCCAGTGTCACCCATGTGATTGCTGCAACTGATGAAAATGGAGCATGCTCCAGGACACGGAAAGTTCTCATGGCAATTCTAAATGGACAATGGATTCTCAAAATGGATTGGCTAAAGGCTTGCATGGAAGGGACAAATATGGTAGAAGAGGAACCATACGAGATTATCCTTGACAACCAAGGGTGTCATGGTGGCCCAAAAACTGGCAGACTTAGGGCATTGGCCAATGAGCCCAAGCTATTCAGTGACTTCAAGTTTTATTTTTCTGGGGATTATGTGACTACATATAAGGAAGATCTTGAAGATTTGGTTGAGGTAGGAGGAGGTACTGTCTTGAGAAGCAAGGAAGAATTAGAAGCTAAAAGACATGAATGTGTAGCAGCTCCTTGGAAGTTGCTCATTGTCTACAATATTGATCCCCCACTAGGATGTAAGTTGGGGGAGGAAGTTTCAATTCTATGGCAGAGACTGAACGATGCCCAAGATTTAGCAGCTAATACTGGTTACCAAATCATTGGTCACACATGGATTCTGGAGTCCATTGCTTCATGTAATTTGCAACCTTTTGTTAGCTAA 2067 0.4253 MSHSLNPWMFNFQKLALELKCPLCLSLFKDPVLLPCNHLFCKSCLGEFTMGLMKCECAVCKTKYAERDVRNMPFVENMVSIYRSLESTFSPSLLPQRSSDDVRVLTPCQASLNSSYGNKKMDKVPSSLPHSKEVGAGKSHKFKGSDTVVHDKTEGLELSPGGRVDSHSTGKPNPMQHSQMAVGGHGDCKVMEMDVNQVTQSATGSPPFCDTKGSECSDLDSEHPLVAGRVEKSSLKRATTFESDGLMIELKRQKNNLAADGYVQSSSTYHNNLVGSCSNMDLKSGMGPGAMFVAKPDDSHTSTSICSFCQSSKISEATGEMLHSANGYMVTGDKAMQPNVIHVHKTCANWAPQAYFVDDIVKNLKSEVARGSKLKCSKCGLKGAALGCLVKSCRKTYHAPCAMEISTCRFDHENFLMLCPAHARVKFPNEKSRSKKQPTQNLPALTHLPSHESNPLPALQDDSKKLVFCGSALPPNEKALFVNFASKVGAVVTKYWTPSVTHVIAATDENGACSRTRKVLMAILNGQWILKMDWLKACMEGTNMVEEEPYEIILDNQGCHGGPKTGRLRALANEPKLFSDFKFYFSGDYVTTYKEDLEDLVEVGGGTVLRSKEELEAKRHECVAAPWKLLIVYNIDPPLGCKLGEEVSILWQRLNDAQDLAANTGYQIIGHTWILESIASCNLQPFVS* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0480 688 Gene3D BRCT domain 575 681 IPR036420 -
Lan9g0480 688 CDD BRCT_Bard1_rpt1 466 540 - -
Lan9g0480 688 MobiDBLite consensus disorder prediction 434 448 - -
Lan9g0480 688 MobiDBLite consensus disorder prediction 116 177 - -
Lan9g0480 688 PANTHER BRCA1-ASSOCIATED RING DOMAIN PROTEIN 1 4 686 - -
Lan9g0480 688 Pfam RING-type zinc-finger 21 45 IPR027370 -
Lan9g0480 688 ProSitePatterns Zinc finger RING-type signature. 36 45 IPR017907 -
Lan9g0480 688 SUPERFAMILY BRCT domain 466 552 IPR036420 -
Lan9g0480 688 Pfam BRCA1 C Terminus (BRCT) domain 465 539 IPR001357 -
Lan9g0480 688 Gene3D BRCT domain 462 568 IPR036420 -
Lan9g0480 688 ProSiteProfiles BRCT domain profile. 466 552 IPR001357 -
Lan9g0480 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 92 IPR013083 -
Lan9g0480 688 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 4 686 IPR031099 GO:0006281|GO:0006974
Lan9g0480 688 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 300 425 IPR013083 -
Lan9g0480 688 ProSiteProfiles Extended PHD (ePHD) domain profile. 303 423 IPR034732 -
Lan9g0480 688 ProSiteProfiles BRCT domain profile. 573 688 IPR001357 -
Lan9g0480 688 ProSiteProfiles Zinc finger RING-type profile. 21 61 IPR001841 -
Lan9g0480 688 MobiDBLite consensus disorder prediction 429 455 - -
Lan9g0480 688 Pfam BRCT domain, a BRCA1 C-terminus domain 575 685 IPR001357 -
Lan9g0480 688 Pfam PHD-like zinc-binding domain 344 422 - -
Lan9g0480 688 SUPERFAMILY RING/U-box 18 83 - -
Lan9g0480 688 SUPERFAMILY BRCT domain 577 685 IPR036420 -
Lan9g0480 688 SMART BRCT_7 456 542 IPR001357 -
Lan9g0480 688 SMART BRCT_7 575 681 IPR001357 -
Lan9g0480 688 SMART ring_2 21 60 IPR001841 -
Lan9g0480 688 MobiDBLite consensus disorder prediction 134 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0480 Lan-Chr9 7149746 7155939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0480 13 83 C2H2 Transcription Factor Family AT5G39550 30.986 1.67e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0480 K10683 - gmx:100784883 895.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0480 9 7149746 7155939 Lan19g0513 19 7773869 7778867 LSH