Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0465 ATGAATCATTGTGTTCCTGATTTTGATGACCAAGATTACCCAAAGAAACACTCCATGGGAGATGAAGATACCATGGAGCTGTTATGGCAAAACGGTCAAGTTGTGATGCAGAGCCAGAACCACCGTCATATCAGAAAACCAACGCATCCTCCGCCGGCAAGAATCTCCGGTACATCAATTCGACCAGAAGTGTTGAATCAGAATCTGTTCATGCAAGAAGATGAAATGACTTCATGGCTTCATCACTGTCCAATTGACTATGACGATAATCAAAATTTCTGCGCCGATTTACTCTACTTGCCGCCGCCAACGCCGCCGGTTAACGTTAATCACCAAAGCAGTAATAACAATAACAGTGGCATGCAAACCGTTGCTCAAAATTCTCAACTGACGGAGCTCCGGCAGAGTCAGAAACCGGCGGCGCCTCGACCTCCGATTCCGCCGCCTAGGAGGACGGAGCAGGCGGTGCGTGCGAATACACCGAACTTCGCTTACTTCTCGAAGCAGAAGACCAAAACTGAGCTAGGACCTTCGTCGAGTTCGATGAACGCTGCAAAGGAATCAACTATGGTGGATTCGTGCGACACGCCTTTTCTAGCGGCGGTTTCGAGATTCTCGGAGCCTACAGAAGGTGACGGTTTCGGCGGTAGGAGCATGAGCGCCACCACGACATCTGGCGGTGGAGGAAAGGAGACGACGACGTTTGGTATGACGTCATCGCCGGGAGGTTCGAGTAGCAGCGGTGAAATGGATCGGGAATTGAGGGCGGAGGATCGGAAGCGGAAGGGGCGAGTGGAAGCGGAGGAATGGGAGAGTCGGAACGAGGATGTTGATTTTGAATCTGCCGAAGGGAAGAAAAAGGTCCGTGGATCATCTACAAAGAGATCTCGTGCTGCAGAAGTTCATAATCTCTCTGAGAGGAAGCGCCGTGATCGGATTAATGAAAAGATGAAATCTCTGCAAGAACTTATACCACGTTGTAACAAGTCTGACAAAGCTTCAATGCTGGATGAAGCCATTGAATACTTGAAGTCACTACAGTTACAAGTGCAGATGATGTCAATGGGGTGTGGCATGGTACCTATGATGTTTGCTGGAATGCAACCATATATGCCTGCAATGGGAATGGGTATGGGTATGGGTTTGGGTATGGAAATGGGAATGAACAGACAAGTGATGCCATTTCCGAATATGTTAGCCGGTTCGGCTATGCCATCGACAACTCCGCATTTGGGACCGAGGTTTCCTATGCCTCCTTTTCATATGCAGCATGTTCCAGCACCAGATTCATCTCGAATGCAAGCAATGAATCAGACAAATAATAATATGCCAAACTCAGTTGCTATGCCTGTTCCAAATCAGTCATGTATGCCAAACATGACTGATCCTTATCAACAATACCTTGCTCCTCACCAGATGCAATTTCAATTAATGCAGAATCAGGCAATGAACCAACTAAATGTTAGCAAGCCAAGTACCAGTCGGGGCCCCGAGAAGCCAGAAAACCATCAGTCAGGTTAG 1521 0.4806 MNHCVPDFDDQDYPKKHSMGDEDTMELLWQNGQVVMQSQNHRHIRKPTHPPPARISGTSIRPEVLNQNLFMQEDEMTSWLHHCPIDYDDNQNFCADLLYLPPPTPPVNVNHQSSNNNNSGMQTVAQNSQLTELRQSQKPAAPRPPIPPPRRTEQAVRANTPNFAYFSKQKTKTELGPSSSSMNAAKESTMVDSCDTPFLAAVSRFSEPTEGDGFGGRSMSATTTSGGGGKETTTFGMTSSPGGSSSSGEMDRELRAEDRKRKGRVEAEEWESRNEDVDFESAEGKKKVRGSSTKRSRAAEVHNLSERKRRDRINEKMKSLQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFAGMQPYMPAMGMGMGMGLGMEMGMNRQVMPFPNMLAGSAMPSTTPHLGPRFPMPPFHMQHVPAPDSSRMQAMNQTNNNMPNSVAMPVPNQSCMPNMTDPYQQYLAPHQMQFQLMQNQAMNQLNVSKPSTSRGPEKPENHQSG* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0465 506 MobiDBLite consensus disorder prediction 206 309 - -
Lan9g0465 506 MobiDBLite consensus disorder prediction 131 186 - -
Lan9g0465 506 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 363 IPR036638 GO:0046983
Lan9g0465 506 CDD bHLH_AtPIF_like 297 360 - -
Lan9g0465 506 MobiDBLite consensus disorder prediction 155 186 - -
Lan9g0465 506 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 297 346 IPR011598 GO:0046983
Lan9g0465 506 MobiDBLite consensus disorder prediction 216 247 - -
Lan9g0465 506 Pfam Helix-loop-helix DNA-binding domain 301 347 IPR011598 GO:0046983
Lan9g0465 506 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 506 IPR031066 -
Lan9g0465 506 Gene3D - 292 355 IPR036638 GO:0046983
Lan9g0465 506 SMART finulus 303 352 IPR011598 GO:0046983
Lan9g0465 506 MobiDBLite consensus disorder prediction 250 309 - -
Lan9g0465 506 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0465 Lan-Chr9 6954791 6960221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0465 1 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.746 1.10e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan9g0465 HLH 1.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0465 - - gmx:100797225 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0465 9 6954791 6960221 Lan5g1221 5 26068056 26073777 LSH
Lan9g0465 9 6954791 6960221 Lan11g1372 11 21058568 21065480 PCT
Lan11g1372 11 21058568 21065480 Lan9g0465 9 6954791 6960221 PCT