LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan9g0449	ATGTCAAACCCAATGCCTAACTCTGAATCAAACCCAATCCCTAATTCCGAATCAAACCCAATCCCTAATTCCGAATCAAACCCGAGAAGGAGCAAAGGTCGCCAAAGGATCCAAATGAAAAAGATGACCAATGAAAGCAACCTTCAAGTCACATTTTCGAAACGTCGAAATGGACTTTTCAAAAAAGCTAGCGAGCTTTGCACCCTTTGCGGTGCACAAGTTGCTCTCATTGTTTTCTCTCCTGCAGAGAAAGCTTTCTCTTTTGGCGACCCTAATGTCAGTGATGTCATTGACCGCTATATGATGATGCCCCCACAACCAAACAACGCTACCATGCAGATTCTCGAGGCTCATCGTTGTGCAAATGTGCGTGAGATGAATACACATCTTACTCAGATCAATTCAGATCTAGAGATTGAGAAGATGTGCAATGACATGCTGAACAAGCAAAGAAAAGATGCACAAAACCAGTTCTGGTGGGCTACACCTATTGAAGAGATGAACGATGCTGAAAAACTTGAACAACTCAAGAAAGCATTGGAGGATCTTAAGAAGAATGTTATACTCCAAGCACAAAACCAGAATGTTCCTCAAAACCCTGCTCCTCCTGCTCAAAACCCACCTCCACAATTTTTTGCAGGTGGTTCATCTTCTAACAACCAACCATTCATGTTTCATCAGCACCAATGTCCACAACAACCTCAAATGATTCCTCTTCCACCACCTCAATCATTCTTTGAAGGTGGTTCTTCTTCAAACAACCCTCCTCTTATGCAACCTAGCCATATGTCTGAAGGGGTACCCATGATGATGCCCTACCAAGGTGGTTTCAACAATATGGGAGGGTATGGACCTCAAGGTGGATTCTTTTAA	873	0.4307	MSNPMPNSESNPIPNSESNPIPNSESNPRRSKGRQRIQMKKMTNESNLQVTFSKRRNGLFKKASELCTLCGAQVALIVFSPAEKAFSFGDPNVSDVIDRYMMMPPQPNNATMQILEAHRCANVREMNTHLTQINSDLEIEKMCNDMLNKQRKDAQNQFWWATPIEEMNDAEKLEQLKKALEDLKKNVILQAQNQNVPQNPAPPAQNPPPQFFAGGSSSNNQPFMFHQHQCPQQPQMIPLPPPQSFFEGGSSSNNPPLMQPSHMSEGVPMMMPYQGGFNNMGGYGPQGGFF*	291

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan9g0449	290	ProSiteProfiles	MADS-box domain profile.	32	92	IPR002100	GO:0003677\|GO:0046983
	Lan9g0449	290	Gene3D	-	44	111	IPR036879	GO:0003677\|GO:0046983
	Lan9g0449	290	SMART	madsneu2	32	91	IPR002100	GO:0003677\|GO:0046983
	Lan9g0449	290	Coils	Coil	166	193	-	-
	Lan9g0449	290	CDD	MADS_MEF2_like	33	101	IPR033896	GO:0000977\|GO:0045944
	Lan9g0449	290	SUPERFAMILY	SRF-like	33	108	IPR036879	GO:0003677\|GO:0046983
	Lan9g0449	290	MobiDBLite	consensus disorder prediction	1	28	-	-
	Lan9g0449	290	PRINTS	MADS domain signature	34	54	IPR002100	GO:0003677\|GO:0046983
	Lan9g0449	290	PRINTS	MADS domain signature	54	69	IPR002100	GO:0003677\|GO:0046983
	Lan9g0449	290	PRINTS	MADS domain signature	69	90	IPR002100	GO:0003677\|GO:0046983
	Lan9g0449	290	Gene3D	-	112	199	-	-
	Lan9g0449	290	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	41	88	IPR002100	GO:0003677\|GO:0046983
	Lan9g0449	290	PANTHER	AGAMOUS-LIKE MADS-BOX PROTEIN AGL23-RELATED	32	195	-	-
	Lan9g0449	290	MobiDBLite	consensus disorder prediction	1	49	-	-
	Lan9g0449	290	PANTHER	MADS BOX PROTEIN	32	195	-	-
	Lan9g0449	290	MobiDBLite	consensus disorder prediction	195	220	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan9g0449	Lan-Chr9	6746750	6747786	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan9g0449	29	223	Type I MADS-box Gene Family	AT5G60440	51.256	4.22e-55	179

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Lan9g0449		SRF-TF	2.1e-24	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan9g0449	-		-	lang:109356189	510.375