Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0442 ATGCCTCGCTACGAAGATAGATATGATAATACTCGCCTGTATGTTGGTCGCTTGAACTCAAGGACACGCTCCCGCGATCTTGAGCGAGTCTTCAACAGATATGGAAGAGTTCGCAATGTGGATATGAAGCATGATTTCGCCTTTGTTGAATTTAGTGATCCTCGAGATGCTGATGATGCAAGATATCACTTGGATGGTCGTGATGTTGATGGAAGTCGTCTTATTGTTGAGTTCGCAAAAGGGGCTCCTCGTGGTTCCCGGGAATATTTGGGTCGAGGTCCTGCTCCTGGATCTGGGCGCTGCTTTAACTGTGGCCTTGATGGCCACTGGGCTCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGCTGTGGGGAGAGAGGTCACATAGAAAAGAACTGCAAGAATAGTCCCAAAAAGCTGAGACGTGAAAGGAGTTATTCACGCTCACCAGTCAGGGGACGTTCTCCTCGTCGTGGCAGAAGCAGGGAGCGAAGCTACAGCCGAGACCGCAGCTACAGCCGATCAAGATCCCCTGTCCGTGAACGAAGTCCTGTTCGTAGAGATAGATCAGAGAGTCCTCGCTACAGAAGCCCTGAACCCAAAAGCAGTCCTCTGCCCTCCAGTGCAAGGAAGCATAGCCCATCACCTGACCGAGGTAGCCCACCGAAGAGTGGTGACATTTCTCCTGGTAATGATAAGTTGGCCATACCGCAAGACGGGTCTGACTACAGCGATGGTCCGAGAGAGAAGAGTGGAAGCCCTGCTAGCCCTGCAAGGGACCATGAAGATGATAGTCCTAGAGCTAATGGTGCTAGCCGTAGCCCTAGCAGCAGTCCCAGGGATGACAGGAGCCCCGTTGACAATGATGATGACAACCACCATGGTTCCCCTAGAGGTAGTGAATCACCTTAA 921 0.5157 MPRYEDRYDNTRLYVGRLNSRTRSRDLERVFNRYGRVRNVDMKHDFAFVEFSDPRDADDARYHLDGRDVDGSRLIVEFAKGAPRGSREYLGRGPAPGSGRCFNCGLDGHWARDCKAGDWKNKCYRCGERGHIEKNCKNSPKKLRRERSYSRSPVRGRSPRRGRSRERSYSRDRSYSRSRSPVRERSPVRRDRSESPRYRSPEPKSSPLPSSARKHSPSPDRGSPPKSGDISPGNDKLAIPQDGSDYSDGPREKSGSPASPARDHEDDSPRANGASRSPSSSPRDDRSPVDNDDDNHHGSPRGSESP* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0442 306 MobiDBLite consensus disorder prediction 134 306 - -
Lan9g0442 306 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 13 74 IPR000504 GO:0003723
Lan9g0442 306 ProSiteProfiles Zinc finger CCHC-type profile. 122 138 IPR001878 GO:0003676|GO:0008270
Lan9g0442 306 SUPERFAMILY Retrovirus zinc finger-like domains 92 139 IPR036875 GO:0003676|GO:0008270
Lan9g0442 306 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Lan9g0442 306 Pfam Zinc knuckle 121 138 IPR001878 GO:0003676|GO:0008270
Lan9g0442 306 Gene3D - 91 118 - -
Lan9g0442 306 Gene3D - 119 151 - -
Lan9g0442 306 MobiDBLite consensus disorder prediction 163 199 - -
Lan9g0442 306 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 283 - -
Lan9g0442 306 SUPERFAMILY RNA-binding domain, RBD 8 100 IPR035979 GO:0003676
Lan9g0442 306 ProSiteProfiles Zinc finger CCHC-type profile. 100 115 IPR001878 GO:0003676|GO:0008270
Lan9g0442 306 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 11 81 IPR000504 GO:0003723
Lan9g0442 306 SMART rrm1_1 12 77 IPR000504 GO:0003723
Lan9g0442 306 MobiDBLite consensus disorder prediction 134 153 - -
Lan9g0442 306 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS2Z33 7 283 - -
Lan9g0442 306 MobiDBLite consensus disorder prediction 283 306 - -
Lan9g0442 306 Gene3D - 3 89 IPR012677 -
Lan9g0442 306 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Lan9g0442 306 SMART c2hcfinal6 122 138 IPR001878 GO:0003676|GO:0008270
Lan9g0442 306 MobiDBLite consensus disorder prediction 257 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0442 Lan-Chr9 6702153 6705275 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0442 K12896 - gmx:100813237 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0442 9 6702153 6705275 Lan5g0326 5 5513040 5516358 LSH