Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0440 ATGGTTAGATCATGTTGGAAACCAAATGGAGAGGATTGTGTGAGAGGAAGAGTTGAAGGGATGCTATGGTATAAGGATTTAGGGAACCATGTCCATGGAGAATTTTCAATGGCTATGGTTCAAGCCAATAGTTCAATGGAGGATAGGAGTCAAGTTGAATCTGGACCCTTGAGTTTTGATCATTTGGGTCCTCAAGGGACATTTATTGGTGTATATGATGGTCATGGTGGAACTGCAGCATCACAGTTTGTCTGTGATAATCTTTTCAGCAATTTCAAGAGTTTTGCAGCTGAACATCAAGGCATTTCAGAACATGTTATCAGAAGGGCCTTTCTAGCAACAGAAGAAGGTTTCCTTTCTCTTGTGAAGAAACAATGGCTAAACAAGCCACAAATTGCATCTACTGGTTCATGTTGTTTGGCAGGGATAATTTGCAATGGCATGCTATATATTGCAAATGCAGGTGATTCAAGAGCTGTTTTAGGAAGAACAGAAAGGGCAACAAGAGTAACAACTGCTATTCAATTATCAGCAGAGCACAATGTTAGCATCGAAACTGAGAGAGACGATCTTCGGTCGAAGCATCCCTATGATTCGCAAATTGTGGTTATGAAGCACAAAGTCTGGCGTGTGAAAGGCCTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCAGAGTTTAACAAAGAGCCTCTACCATACAAGTTTAGACTGAGTGAACCTTTCTTCAAGCCAATTCTTAGTTGTGAGCCATCCATATCAACGCATAAACTCGACCCGGCCGATCAGTTTATCATATTTGCTTCTGATGGTTTATGGGAGCAACTTAGCAGCCAAGAAGCTGTCAACATAGTCAGCAACAACCCACACAATGGAATTGCAAGGAGGCTTGTGAAAGCTGCACTGAGAGAAGCAGCTAAGAAGAGAGAAATAAGATTCACAGATCTCCAAAAGATTGAAGAAGGTGTGAGGAGACATTTCCATGATGATATTTCAGTAATTGTTGTATTTCTAAATCATAAACTGATTGATAATAGCTCTCTCTGGGTATCTCCTGTTTCAATCAGTGGAGGTAGATCAACCAATTCCTAA 1104 0.4067 MVRSCWKPNGEDCVRGRVEGMLWYKDLGNHVHGEFSMAMVQANSSMEDRSQVESGPLSFDHLGPQGTFIGVYDGHGGTAASQFVCDNLFSNFKSFAAEHQGISEHVIRRAFLATEEGFLSLVKKQWLNKPQIASTGSCCLAGIICNGMLYIANAGDSRAVLGRTERATRVTTAIQLSAEHNVSIETERDDLRSKHPYDSQIVVMKHKVWRVKGLIQVSRSIGDAYLKKAEFNKEPLPYKFRLSEPFFKPILSCEPSISTHKLDPADQFIIFASDGLWEQLSSQEAVNIVSNNPHNGIARRLVKAALREAAKKREIRFTDLQKIEEGVRRHFHDDISVIVVFLNHKLIDNSSLWVSPVSISGGRSTNS* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0440 367 Gene3D - 23 351 IPR036457 -
Lan9g0440 367 CDD PP2Cc 35 342 IPR001932 -
Lan9g0440 367 ProSitePatterns PPM-type phosphatase domain signature. 68 76 IPR000222 GO:0043169
Lan9g0440 367 SMART PP2C_4 28 340 IPR001932 -
Lan9g0440 367 SUPERFAMILY PP2C-like 37 343 IPR036457 -
Lan9g0440 367 ProSiteProfiles PPM-type phosphatase domain profile. 31 342 IPR001932 -
Lan9g0440 367 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 3 364 - -
Lan9g0440 367 PANTHER ALPHABET, ISOFORM E-RELATED 3 364 - -
Lan9g0440 367 Pfam Protein phosphatase 2C 39 311 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0440 Lan-Chr9 6690567 6693988 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0440 1 362 PP2C-type Phosphatase Gene Family AT3G12620 63.859 9.21e-176 492
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0440 K01102 - gmx:100815902 573.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0440 9 6690567 6693988 Lan11g1399 11 22173316 22177484 PCT
Lan9g0440 9 6690567 6693988 Lan20g1037 20 11294622 11298295 PCT
Lan9g0440 9 6690567 6693988 Lan4g1640 4 25285905 25289707 PCT
Lan11g1399 11 22173316 22177484 Lan9g0440 9 6690567 6693988 PCT
Lan20g1037 20 11294622 11298295 Lan9g0440 9 6690567 6693988 PCT
Lan4g1640 4 25285905 25289707 Lan9g0440 9 6690567 6693988 PCT