Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0437 ATGGCGGCAGCAGCAGCTCGTCCCCTAGTCTCCGTTCAGGTCGTCTCCGGCGATATCGCCACCGACACACCTTCCACCGTTGCTCTCCCCGACGTCATGAAGGCTTCAATTCGCCCTGATATTGTTAACTTCGTCCACTCCAACATCTCTCGCAACAGCCGCCAACCCTACGCCGTCAGCCGCAAAGCCGGCCACCAAACCTCCGCCGAGTCCTGGGGAACCGGACGCGCTGTGTCCCGTATCCCTCGTGTTTCCGGAGGCGGAACTCACCGTGCCGGACAAGCCGCGTTCGGAAACATGTGCCGCGGTGGTCGTATGTTCGCTCCGACCAGGATCTGGCGCCGCTGGCACCGCAAGGTCAATATCAACCAGAAGCGTTACGCCATCGTTTCCGCCATCGCTGCTTCCGCGATACCTTCCCTTGTTCAAGCCCGCGGCCACCGCATCGAAACCGTCCCGGAGTTGCCGTTGGTCGTGAGCGACACCGTGGAAGGCGTTGAGAAGAGCAAGGAAGCAATCAAGGTGCTGAAAGAGATCGGTGCTTTTGCCGATGCGGAGAAAGCGAAAGATAGCCGCGGAATTCGTCCCGGTAAGGGAAAAGCGCGTAACCGTAGATACATTTCTCGCAAGGGACCTCTTATCGTGTATGGAACCGAAGGCGCGAAAGCCGTGAAGGCTTTTCGCAACATTCCAGGCGTTGAGATTGCCAATGTGGAGAGGCTGAACCTTCTGAAACTTGCACCTGGTGGTCATCTAGGTCGTTTCGTTGTTTGGACTAAATCTGCTTTCGAGAAACTTGATTCGATCTATGGAACATTTGAGCAGGCTTCTGAGAAGAAGAAGGGATATGTGCTGCCTCGGTCGAAGTTGGTGAATGCTGACTTGGCTAGGCTTATTAACTCTGATGAGGTTCAATCTGTGGTGAAGCCGATTAAGAAGGAGGTTAAGAGGAGTGGAGTTAAGAAGAACCCACTTAAGAATCTTAATGTTCTGTTGAAGCTGAATCCTTATGCTAAAACTGCTAAGAGGATGGCGATTTTGGCTGAGCAGCAGCGCATTGTTGCGAAGAAGGAGAAGCTCGCAAAGAAGCGCGGCACTGTCTCCAAGGAGGAGGCTTCTGCTATCAAGGCTGCAGGAAAGGCATGGTATCAAACTATGGTGTCTGACTCTGATTATGCTGAATTTGACAACTTCTCCAAGTGGCTCGGTGTTTCACAGTGA 1221 0.534 MAAAAARPLVSVQVVSGDIATDTPSTVALPDVMKASIRPDIVNFVHSNISRNSRQPYAVSRKAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKVNINQKRYAIVSAIAASAIPSLVQARGHRIETVPELPLVVSDTVEGVEKSKEAIKVLKEIGAFADAEKAKDSRGIRPGKGKARNRRYISRKGPLIVYGTEGAKAVKAFRNIPGVEIANVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGTFEQASEKKKGYVLPRSKLVNADLARLINSDEVQSVVKPIKKEVKRSGVKKNPLKNLNVLLKLNPYAKTAKRMAILAEQQRIVAKKEKLAKKRGTVSKEEASAIKAAGKAWYQTMVSDSDYAEFDNFSKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0437 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Lan9g0437 406 MobiDBLite consensus disorder prediction 55 74 - -
Lan9g0437 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lan9g0437 406 PANTHER 60S RIBOSOMAL PROTEIN L4 3 406 IPR045240 -
Lan9g0437 406 Pfam Ribosomal protein L4/L1 family 28 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Lan9g0437 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 352 IPR025755 -
Lan9g0437 406 SUPERFAMILY Ribosomal protein L4 19 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Lan9g0437 406 PANTHER BNAC03G35890D PROTEIN 3 406 - -
Lan9g0437 406 MobiDBLite consensus disorder prediction 55 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0437 Lan-Chr9 6679403 6681572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0437 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 80.296 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0437 K02930 - gmx:100779764 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0437 9 6679403 6681572 Lan5g1190 5 25903171 25905171 LSH
Lan9g0437 9 6679403 6681572 Lan11g1405 11 22291364 22293648 PCT
Lan9g0437 9 6679403 6681572 Lan20g1050 20 11556339 11558422 PCT
Lan11g1405 11 22291364 22293648 Lan9g0437 9 6679403 6681572 PCT
Lan20g1050 20 11556339 11558422 Lan9g0437 9 6679403 6681572 PCT