Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0429 ATGGCAACTGAACCAAAAGACTTTCTCAAAAGCAATGCTACAAATTCCACTGCAACCATAACTGATACTGATAACTCAATTCAGAAGGGTGTAGAATCAACTGAAATAACGGAAGAGCTCCCGAGTAAACAACAACAACATGCGAGAAAACAAAACCTTATCTTGGAGATTCCAACGAGAAATCCGGATGAAACAACAGATGGTCTTTTTAGAATAAACACACCTCCCACGACGCAGAACTTTTCATCTTTCTCCAGAAGCAATGAGGTTCAAGGTTCCTCATCAACAAAAAATAAATCAACTTTTAATTCAGCCCTTATTCCAAAATTCAGTTTTGGATTTCACAACACGAGTTCGGATATTGAAAAGGCTTCAGTCCTGGAACTTGAAGGTTCACCACCGGAGGTGGCGCCGAAAAAGCCTATGATTTCAAGGACATTATCACTTACAAAGTTGATCAGCAGTACTCCTAGTGGGAATAAAATGTCATCATTACCGGTAACTCCGATTTCTCAATCAAATACTGAGTCTGCACATGGAGGGAACACAGCATATCCAGCAACATCTGTTAAAAAAGGACGGGAATTTCCGATTCACCGTTCCCGTTCAGTTCCAGTGCTTACCAAATATGGGAACACATCTTTAGGTGGCATGTTTCGTGTAGTTCCAACCACACCGCGGTTTGCAGGGAGTATTGCCACAACATCTATGAAATCTCCACCTGAAGATACTGTTGAAAATGAGGACGGAGAAGATATTCCAGAAGAAGAAGCCGTGTGCAGAATTTGCTTGATTGAATTACGAGAAGGTGGTGATACCCTTAAATTGGAGTGCAGCTGCAAAGGTGAACTTGCACTTGCACACCAAGATTGTGCAGTTAAATGGTTTAGTGTGAAAGGCAATAGAACATGTGATGTTTGTAAGCAGGAAGTTCAGAACCTACCTGTCACTCTTCTAAGAGTTCCAAGTGCCCCGGGAGTTAGCATTTTCGGGAGCAGACAGCAATACAGGCAACGGGTTTGGCAAAATGTTCCGGTTCTTGTCTTTATCAACATGCTGGCATATTTTTGTTTTCTCGAACAGCTTCTTGTTTCTGGTATGGGATCTACGGCCGCAGCCATATCGATCCCATTTTCTTGTATACTCGGTCTTCTTGCTAGCATGACATCCATAACAATGGTGAGAAGAAAATATGTTTGGGTTTATGCAACTGCTCAGTTTGTTATGGTGGTTCTCGCCGGGCGCCTTTTCTACACTCTGCTTCCTAAACAAGCTGTTGTTCTATGTATTCTGCTTTCTACATTTACTGGGTTTGGAGTTGTGATGTTTGGAGGTACTGTTCTGAGTGAGTTTATGAAGTGGAGGAGAAGAAGGGTTTCTCAGTTGAATCAGCAGCATGGTTCAGAAGAGGTTGTAACTTCTGATCAAACATCAACAACAGAAACCATTCATTAA 1455 0.4192 MATEPKDFLKSNATNSTATITDTDNSIQKGVESTEITEELPSKQQQHARKQNLILEIPTRNPDETTDGLFRINTPPTTQNFSSFSRSNEVQGSSSTKNKSTFNSALIPKFSFGFHNTSSDIEKASVLELEGSPPEVAPKKPMISRTLSLTKLISSTPSGNKMSSLPVTPISQSNTESAHGGNTAYPATSVKKGREFPIHRSRSVPVLTKYGNTSLGGMFRVVPTTPRFAGSIATTSMKSPPEDTVENEDGEDIPEEEAVCRICLIELREGGDTLKLECSCKGELALAHQDCAVKWFSVKGNRTCDVCKQEVQNLPVTLLRVPSAPGVSIFGSRQQYRQRVWQNVPVLVFINMLAYFCFLEQLLVSGMGSTAAAISIPFSCILGLLASMTSITMVRRKYVWVYATAQFVMVVLAGRLFYTLLPKQAVVLCILLSTFTGFGVVMFGGTVLSEFMKWRRRRVSQLNQQHGSEEVVTSDQTSTTETIH* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0429 484 MobiDBLite consensus disorder prediction 1 99 - -
Lan9g0429 484 PANTHER OS02G0165000 PROTEIN 11 481 - -
Lan9g0429 484 SMART ringv_2 259 308 IPR011016 GO:0008270
Lan9g0429 484 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Lan9g0429 484 MobiDBLite consensus disorder prediction 154 184 - -
Lan9g0429 484 SUPERFAMILY RING/U-box 256 311 - -
Lan9g0429 484 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 11 481 - -
Lan9g0429 484 MobiDBLite consensus disorder prediction 465 484 - -
Lan9g0429 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 315 IPR013083 -
Lan9g0429 484 CDD RING_CH-C4HC3_MARCH 260 308 - -
Lan9g0429 484 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Lan9g0429 484 MobiDBLite consensus disorder prediction 66 99 - -
Lan9g0429 484 MobiDBLite consensus disorder prediction 8 52 - -
Lan9g0429 484 MobiDBLite consensus disorder prediction 231 251 - -
Lan9g0429 484 MobiDBLite consensus disorder prediction 154 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0429 Lan-Chr9 6203157 6206987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0429 245 314 C3H Transcription Factor Family AT2G37950 39.437 2.52e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0429 - - gmx:100789854 555.829