Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0409 ATGCCGATCCGAAACATCGCAATCGGTAGACCCGAAGAAGCAACACACCCAGACACATTGAAAGCAGGCCTTGCTGAATTCATCTCAACTTTCATCTTCGTCTTTGCGGGTTCGGGTTCAAGCATTGCTTACAACAAGCTCACTAATGATGGTCCTGCTACTCCTGCTGGACTCATATCAGCTTCCATTGCTCATGCTTTTGCTCTCTTTGTTGCTGTTTCTGTTGGTGCTAATATCTCTGGTGGACATGTTAATCCTGCTGTTACTTTTGGTGCTTTTGTTGGTGGTAATATCACACTTCTTCGTGGTGTTGTTTATGTTGTTGCTCAGCTTCTTGGATCCATTGTTGCGTCTTTCTTACTTACCTTTGTCACTGGATTGGGTGTTCCAGCATTTGGTCTTTCAGCAGGAGTTGGTGTTGGAAACGCAGTGGTTCTTGAAATAGTGTTGACTTTTGGTTTAGTCTACACAGTTTATGCCACAGCCATTGACCCAAAGAAGGGTAGTTTAGGAACTATTGCTCCAATAGCCATTGGTTTCATTGTTGGTGCTAACATTTTAGTTGGTGGAGCTTTTAGTGGAGCATCAATGAACCCAGCTGTTACATTTGGGCCTGCTATTGTGAGCTGGACCTGGACCAACCATTGGATCTATTGGGTTGGGCCTCTTATTGGTGGTGGGCTTGCTGGGCTTATCTATGAGGTTCTCTTCATCAACCATAGTCATGAACAAATCCCAACCGTTGATTACTAG 753 0.4449 MPIRNIAIGRPEEATHPDTLKAGLAEFISTFIFVFAGSGSSIAYNKLTNDGPATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGVVYVVAQLLGSIVASFLLTFVTGLGVPAFGLSAGVGVGNAVVLEIVLTFGLVYTVYATAIDPKKGSLGTIAPIAIGFIVGANILVGGAFSGASMNPAVTFGPAIVSWTWTNHWIYWVGPLIGGGLAGLIYEVLFINHSHEQIPTVDY* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0409 250 PANTHER AQUAPORIN TIP1-1 1 250 - -
Lan9g0409 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0409 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0409 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0409 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0409 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0409 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0409 250 CDD MIP 21 236 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0409 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Lan9g0409 250 PANTHER AQUAPORIN-8 1 250 IPR034294 -
Lan9g0409 250 SUPERFAMILY Aquaporin-like 12 245 IPR023271 -
Lan9g0409 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Lan9g0409 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0409 Lan-Chr9 5926662 5929209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0409 1 250 Major Intrinsic Protein MIP AT2G36830 80.478 1.15e-144 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0409 K09873 - gmx:547967 440.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0409 9 5926662 5929209 Lan5g1147 5 24774616 24776201 LSH
Lan9g0409 9 5926662 5929209 Lan19g0421 19 5604213 5605985 LSH