Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan9g0408 ATGCAAGTCCAAGAGGAACAACAACAACATGATCTCAATCACATGCAAATGATCAAGTTGAAGGGCAAGCGTACAAAACGACAAAGATTACCATCTTTGTTTACATTAGCCATGCCTTCAACATCTTCAACCGATAATTCAGAAGAAGAGGAAGACATGGCTAATTGTTTGATTCTCTTAGCTCAAGGGCGCCATCATCATGATCATCATCAAAAACAAAATTCATCACCAGAGTCATATCAAACGACAACACCCGATCATAGCAACAATAACAATAGGAAGAAATTAGGGTTATGCATTTATGAGTGCAAGACTTGTAACCGATGCTTCCCTTCATTCCAAGCCCTTGGTGGCCATAGAGCTAGTCACAAAAAACCTAAGACAAGTATTGCACAAGATCAAAAGCCAGGAGTTACTAGTTTTGTGAATGATTGTTTTGATAATTATTTTGACTCTACAACCACAAACACTACCCTCACCTTGCAAATACCAAATAATAGGGCATTGTTTAGCACCAACCCTACTACTAGGACTATTACTAAATGTAATAAGGTTCATGAGTGTTCTATTTGTGGGTCTGAATTCACATCTGGGCAAGCCTTAGGAGGTCATATGAGAAGACACAGAACTGTTTTGAGCACTACTTCAACAACAACTTTTATGAGTGGTGCAAAAAATATTAGGGTTTGTGAGAGTCCTCATGAATCTATAGAGGTTAAAAAACCTAGAAATGTTTTGGAGTTGGATTTGAATCTTCCTGCACCTGATGAAGATCACAGAGAATGCAAATTGCCATTTCAATCCAAAGAAAAAGTGATTGTTCTAAATGCAACCTCTTTGGTGGATTGTCATTACTAA 858 0.3776 MQVQEEQQQHDLNHMQMIKLKGKRTKRQRLPSLFTLAMPSTSSTDNSEEEEDMANCLILLAQGRHHHDHHQKQNSSPESYQTTTPDHSNNNNRKKLGLCIYECKTCNRCFPSFQALGGHRASHKKPKTSIAQDQKPGVTSFVNDCFDNYFDSTTTNTTLTLQIPNNRALFSTNPTTRTITKCNKVHECSICGSEFTSGQALGGHMRRHRTVLSTTSTTTFMSGAKNIRVCESPHESIEVKKPRNVLELDLNLPAPDEDHRECKLPFQSKEKVIVLNATSLVDCHY* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan9g0408 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 208 IPR013087 -
Lan9g0408 285 Pfam C2H2-type zinc finger 101 126 - -
Lan9g0408 285 Pfam C2H2-type zinc finger 185 210 - -
Lan9g0408 285 SMART c2h2final6 101 123 IPR013087 -
Lan9g0408 285 SMART c2h2final6 186 208 IPR013087 -
Lan9g0408 285 Gene3D Classic Zinc Finger 98 208 - -
Lan9g0408 285 PANTHER ZINC FINGER PROTEIN ZAT5 25 285 - -
Lan9g0408 285 PANTHER GATA ZINC FINGER DOMAIN-CONTAINING PROTEIN 15-LIKE 25 285 - -
Lan9g0408 285 MobiDBLite consensus disorder prediction 64 91 - -
Lan9g0408 285 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Lan9g0408 285 SUPERFAMILY beta-beta-alpha zinc fingers 100 208 IPR036236 -
Lan9g0408 285 MobiDBLite consensus disorder prediction 75 91 - -
Lan9g0408 285 ProSitePatterns Zinc finger C2H2 type domain signature. 103 123 IPR013087 -
Lan9g0408 285 ProSiteProfiles Zinc finger C2H2 type domain profile. 101 128 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan9g0408 Lan-Chr9 5914407 5915612 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan9g0408 9 285 C2H2 Transcription Factor Family AT2G28200 39.198 8.04e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan9g0408 zf-C2H2_6 1.7e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan9g0408 - - lang:109356517 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan9g0408 9 5914407 5915612 Lan5g1146 5 24766127 24767235 LSH
Lan9g0408 9 5914407 5915612 Lan19g0420 19 5542257 5543367 LSH